Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1684 ATGGTGAAAAACACTTACTCTGATAAAAGTGGACATAGGAAAGGAACATGGACACCAGAGGAAGACAAGAAATTGATTGCTTATATTACCAGATATGGTCACTGGAATTGGAACCTACTCCCCAAGTTTGCTGGTCTTGAGAGGTGTGGAAAAAGTTGCAGGCTAAGGTGGCTGAATTACTTAAGGCCTAATATCAAAAGAGGGAACTACACTCAAGAAGAAGATGAAACTATTATCAAGATGGTCCAACGTCTCGGTAACAGATGGTCTCTCATTGCTGCTCAGCTGCCAGGAAGAACAGACAATGAAATAAAAAACTACTGGCACACCAATCTCAAGAAGAAATATCATCAACAGAATGTTAATGCTGAAACTGAAGTTTCCAAGTCAAAAGATCATCAATCTCCAGATGAAGCACTACCAAAGCCAAACAATGTAGATGATGTTGCTTTCCAAAACCTTCCACCCACTTCTCAATCCACCGATTCATGCACGACGTCATCAATAATAATATCCCCAACCCAATTCTCTATAACCACCACAGGTCGTAGCTCTGATGATAGCAAAGAAAAGTTTGATATTCCTTATGAGGATGAGTTTGCTTTTGCAGATGTTATGAACGAAAGCTTCTGGTTGGAACCATATGTTGTTGACATTTCGTGCTATCCTAGTGATGTATTGGTGGCTGAACCGGATTGCTTTAGCCCTGTGCCTGACGTAGAACTTTGGAGTCATGATCATGAATACTTTGCGTGA 756 0.4074 MVKNTYSDKSGHRKGTWTPEEDKKLIAYITRYGHWNWNLLPKFAGLERCGKSCRLRWLNYLRPNIKRGNYTQEEDETIIKMVQRLGNRWSLIAAQLPGRTDNEIKNYWHTNLKKKYHQQNVNAETEVSKSKDHQSPDEALPKPNNVDDVAFQNLPPTSQSTDSCTTSSIIISPTQFSITTTGRSSDDSKEKFDIPYEDEFAFADVMNESFWLEPYVVDISCYPSDVLVAEPDCFSPVPDVELWSHDHEYFA* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1684 251 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Gso12g1684 251 CDD SANT 69 112 IPR001005 -
Gso12g1684 251 SMART sant 66 114 IPR001005 -
Gso12g1684 251 SMART sant 13 63 IPR001005 -
Gso12g1684 251 MobiDBLite consensus disorder prediction 150 165 - -
Gso12g1684 251 CDD SANT 16 61 IPR001005 -
Gso12g1684 251 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso12g1684 251 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gso12g1684 251 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso12g1684 251 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 220 - -
Gso12g1684 251 Gene3D - 69 140 - -
Gso12g1684 251 MobiDBLite consensus disorder prediction 119 165 - -
Gso12g1684 251 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso12g1684 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso12g1684 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso12g1684 251 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso12g1684 251 Gene3D - 14 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1684 Gso-Chr12 40461396 40463887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1684 1 218 MYB Transcription Factor Family AT1G06180 43.379 3.48e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g1684 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1684 K09422 - gmx:100810385 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1684 12 40461396 40463887 Gso11g3184 11 47625901 47633007 GST
Gso12g1684 12 40461396 40463887 Gso12g0861 12 9515271 9516720 PCT
Gso12g1684 12 40461396 40463887 Gso6g2466 6 46342749 46344256 PCT
Gso12g0858 12 9480127 9482665 Gso12g1684 12 40461396 40463887 PCT
Gso6g2468 6 46369939 46372287 Gso12g1684 12 40461396 40463887 PCT