Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1681 ATGTACAGCATGAGGAACCCATGGATCTGCATCTCTCTTCTCACCCTCTTTTTCTCTTTGTTCACCCACAATTCCCTTGCAGCTCTCCCAACCGTTTCTTCAAACCAAACTCTCACTGGGGATCAAACTCTCCTCTCTAAAGGTGGAATCTTTGAATTGGGTTTCTTCAAGCCAGGTAACACCTCTAACTACTACATAGGCATATGGTACAAAAAGGTCACCATACAAACAATAGTTTGGGTAGCAAATAGGGACAACCCTGTCTCTGATAAGAACACTGCCACGTTAACAATATCAGGTGGCAATTTAGTTCTCTTAGATGGATCTTCAAATCAAGTTTGGTCAACAAACATAACTTCTCCCAGGTCAGATTCTGTTGTAGTAGCTGTTCTCAATGATACTGGGAATCTTGTGTTAAAGCCTAATGATGCTTCTGCTTCAGATTCAGATTATCTGTGGCAGAGTTTTGATCACCAAACTGACACGTTCCTTCCGGGTGGCAAAATTAAACTCGACAATACAACAAAGAAGCCTCAATACCTCACTTCATGGAAGAATAACCAAGATCCTGCTACGGGTCTTTTTTCTCTAGAACTAGACCCCAAAGGAAGCAACTCTTATTTGATCCTTTGGAACAAGTCTGAAGAGTATTGGACAAGTGGTGCTTGGAATGGACAAATTTTCAGCTTGGTTCCCGAGATGAGGTTGAATTATATCTACAATTTCTCGTTTGTGATGAACGAGAACGAGAGCTATTTCACATACTCCATGTATAACTCATCCATCATGTCGCGGTTCGTGATGGATGTTTCAGGGCAGATAAAGCAATTCTCATGGTTGGAAAAGACTCAGCAGTGGAACTTGTTTTGGTCGCAGCCGAGACAACAGTGTGAGGTTTATGCCTTTTGTGGCGTGTTTGGGAGCTGCACTGAAAATTCAATGCCGTATTGTAACTGTTTACCTGGTTTTGAGCCAAAATCACCGTCTGATTGGAATCTGTTTGATTACTCAGGTGGGTGTGAAAGGAAAACCAAGTTGCAATGCGAGAATTTGAATTCCTCTAACGGGGATAAGGACGGATTTGTAGCAATTCCAAACATGGCATTACCTAAACATGAACAATCCGTGGGATCAGGGAATGTAGGGGAATGTGAATCAATTTGCTTGAACAACTGCTCCTGCAAAGCTTATGCATTTGACGGTAACCGGTGTTCAATTTGGTTTGACAACCTTCTGAATGTGCAACAGTTATCTCAAGATGATAGTAGCGGACAAACTTTGTATGTCAAACTTGCAGCATCTGAGTTTCATGATGATAAAAACAGAATTGAGATGATCATTGGTGTGGTTGTGGGCGTGGTTGTTGGAATTGGTGTTCTCTTGGCCCTTCTTCTGTATGTCAAGATTAGGCCAAGAAAAAGAATGGTTGGAGCTGTGGAGGGTTCGTTGTTGGTATTTGGGTACCGAGATTTGCAAAATGCAACGAAGAATTTCTCTGATAAATTGGGAGAAGGAGGGTTTGGTTCTGTTTTCAAAGGAACATTGGGTGACACCAGTGTGGTGGCAGTGAAGAAGTTGAAAAGTATTAGCCAAGGAGAGAAACAGTTCCGAACAGAAGTTAACACAATAGGGAAAGTACAACATGTTAATCTCGTTAGACTCCGTGGATTCTGCTGGGAAGGTACCAAAAAGCTGCTAGTTTATGATTACATGCCAAATGGCTCCTTGGATTGCCATTTGTTCCAGAACAATAACTGCAAGGTGTTGGACTGGAAAACAAGATACCAAATTGCCTTGGGAACAGCAAGAGGATTAGCTTACCTTCATGAGAAGTGCAGAGATTGTATTATACACTGTGATGTAAAGCCTGGAAACATTCTCCTAGATGCTGATTTTTGTCCTAAGGTTGCAGACTTTGGCCTAGCTAAACTTGTTGGAAGGGATTTGAGCAGGGTCATCACAGCAGTTAGAGGAACAAAAAACTATATTGCTCCAGAATGGATTTCTGGGGTGCCTATCACAGCAAAAGTTGATGTGTACAGCTATGGGATGATGCTTTTTGAGTTTGTATCAGGTAGGAGGAACTCTGAGCAGTGTGAAGGTGGTCCATTTGCCTCCTTTCCTATCTGGGCAGCAAACGTAGTTACCCAATGTGACAATGTTCTTAGCCTTTTGGATCCTAGTTTGGAGGGAAACGCTGACACTGAAGAGGTGACTCGAATGGCAACAGTTGCATTGTGGTGTGTCCAAGAAAATGAGACTCAGAGACCAACCATGGGTCAGGTAGTTCATATCCTTGAGGGAATCTTGGACGTGAATTTACCTCCCATTCCAAGATCTCTTCAAGTGTTTGTTGACAACTAG 2364 0.4243 MYSMRNPWICISLLTLFFSLFTHNSLAALPTVSSNQTLTGDQTLLSKGGIFELGFFKPGNTSNYYIGIWYKKVTIQTIVWVANRDNPVSDKNTATLTISGGNLVLLDGSSNQVWSTNITSPRSDSVVVAVLNDTGNLVLKPNDASASDSDYLWQSFDHQTDTFLPGGKIKLDNTTKKPQYLTSWKNNQDPATGLFSLELDPKGSNSYLILWNKSEEYWTSGAWNGQIFSLVPEMRLNYIYNFSFVMNENESYFTYSMYNSSIMSRFVMDVSGQIKQFSWLEKTQQWNLFWSQPRQQCEVYAFCGVFGSCTENSMPYCNCLPGFEPKSPSDWNLFDYSGGCERKTKLQCENLNSSNGDKDGFVAIPNMALPKHEQSVGSGNVGECESICLNNCSCKAYAFDGNRCSIWFDNLLNVQQLSQDDSSGQTLYVKLAASEFHDDKNRIEMIIGVVVGVVVGIGVLLALLLYVKIRPRKRMVGAVEGSLLVFGYRDLQNATKNFSDKLGEGGFGSVFKGTLGDTSVVAVKKLKSISQGEKQFRTEVNTIGKVQHVNLVRLRGFCWEGTKKLLVYDYMPNGSLDCHLFQNNNCKVLDWKTRYQIALGTARGLAYLHEKCRDCIIHCDVKPGNILLDADFCPKVADFGLAKLVGRDLSRVITAVRGTKNYIAPEWISGVPITAKVDVYSYGMMLFEFVSGRRNSEQCEGGPFASFPIWAANVVTQCDNVLSLLDPSLEGNADTEEVTRMATVALWCVQENETQRPTMGQVVHILEGILDVNLPPIPRSLQVFVDN* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1681 787 Gene3D Phosphorylase Kinase; domain 1 466 570 - -
Gso12g1681 787 SMART serkin_6 496 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1681 787 SMART ntp_6 356 431 IPR003609 -
Gso12g1681 787 CDD B_lectin 35 158 IPR001480 -
Gso12g1681 787 CDD STKc_IRAK 502 769 - -
Gso12g1681 787 Pfam Protein kinase domain 499 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1681 787 Pfam PAN-like domain 356 414 IPR003609 -
Gso12g1681 787 Gene3D - 27 157 IPR036426 -
Gso12g1681 787 CDD PAN_AP_plant 344 432 - -
Gso12g1681 787 ProSiteProfiles Protein kinase domain profile. 496 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1681 787 Pfam S-locus glycoprotein domain 218 327 IPR000858 GO:0048544
Gso12g1681 787 ProSitePatterns Protein kinases ATP-binding region signature. 502 525 IPR017441 GO:0005524
Gso12g1681 787 Gene3D Transferase(Phosphotransferase) domain 1 571 774 - -
Gso12g1681 787 ProSiteProfiles Bulb-type lectin domain profile. 29 152 IPR001480 -
Gso12g1681 787 SUPERFAMILY Hairpin loop containing domain-like 357 415 - -
Gso12g1681 787 Pfam D-mannose binding lectin 77 185 IPR001480 -
Gso12g1681 787 ProSiteProfiles PAN/Apple domain profile. 348 432 IPR003609 -
Gso12g1681 787 PIRSF SRK 2 787 IPR024171 GO:0004674
Gso12g1681 787 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 7 787 - -
Gso12g1681 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Gso12g1681 787 SUPERFAMILY Protein kinase-like (PK-like) 480 767 IPR011009 -
Gso12g1681 787 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 7 787 - -
Gso12g1681 787 SMART blect_4 35 159 IPR001480 -
Gso12g1681 787 SUPERFAMILY alpha-D-mannose-specific plant lectins 63 224 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1681 Gso-Chr12 40435164 40438196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1681 448 773 Receptor kinase-like Gene Family AT1G56120 45.428 2.62e-75 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso12g1681 Pkinase 5.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1681 - - gmx:100809852 1587.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1681 12 40435164 40438196 Gso11g3186 11 47663717 47666607 GST