Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1679 ATGCATCGAAATCCAAGTACAATTTCCTTCTTAATTTCTCCCTACAACCACATGAGGAACCCATGGTTCTGCATCTCTCTTCTCACCCTCTTTTTCTCTTTGCTCACCCACAATTCCCTTGCAGCTCTCACGAACGTTTCTTCAAACCAAACTCTCACTGGGGATCAAACTCTCCTCTCTAAAGGTGAAATCTTTGAATTGGGTTTCTTCAAGCCAGGTAACACCTCTAACTACTACATAGGCATATGGTACAAAAAGGTCACCATACAAACAATAGTTTGGGTAGCAAATAGGGACAACCCTGTCTCTGATAAGAACACTGCCACGTTAACAATTTCAGGTGGCAATTTAGTTCTCTTAGATGGATCTTCAAATCAAGTTTGGTCAACAAACATAACTTCTCCCAGGTCAGATTCTGTTGTAGTAGCTGTTCTCCGAGATTCTGGGAATCTTGTGTTAACAAATAGGCCTAATGATGCTTCTGCTTCAGATTCAGATTCTCTGTGGCAGAGTTTTGATCACCCAACCGACACGTGGCTTCCGGGCGGCAAAATTAAACTCGACAACAAAACTAAAAAACCTCAGTACCTCACTTCATGGAAGAACAACGAAGATCCTGCCACGGGTCTTTTTTCTCTAGAACTAGACCCCAAAGGAAGCACCTCTTATTTGATCCTTTGGAACAAGTCTGAAGAGTATTGGACAAGTGGTGCTTGGAATGGACACATTTTCAGCTTGGTTCCCGAGATGAGGGCGAATTATATCTACAATTTCTCGTTTGTGACGAACGAGAACGAGAGCTATTTCACATACTCCATGTATAACTCGTCCATCATATCGCGGTTCGTGATGGATGTCTCGGGGCAGGTCAAGCAATTCACGTGGTTGGAAAATGCTCAGCAGTGGAACTTGTTTTGGTCGCAGCCGAGACAACAGTGTGAGGTTTATGCCTTTTGTGGCGCGTTTGGGAGCTGCACTGAAAATTCAATGCCGTATTGTAACTGTTTACCTGGTTTTGAGCCGAAATCACCGTCTGATTGGAATCTGGTTGATTACTCAGGTGGGTGTGAAAGGAAAACCAAGTTGCAATGCGAGAATTTGAATCCCTCTAACGGGGATAAGGACGGGTTTGTAGCAATTCCAAACATTGCATTACCTAAACATGAACAATCTGTGGGATCAGGGAATGCAGGGGAATGTGAATCAATTTGCTTGAACAACTGCTCCTGCAAAGCTTATGCATTTGACAGTAACGGGTGTTCAATTTGGTTTGACAACCTTCTGAATTTACAACAGTTATCTCAAGATGATAGTAGCGGACAAACTTTGTATGTCAAACTTGCAGCATCTGAGTTTCATGATGATAAAAGCAAAATTGGGATGATCATTGGTGTGGTTGTGGGTGTGGTTGTTGGCATTGGGATTCTCTTGGCAATTCTTTTGTTTTTTGTGATTAGGCGAAGGAAGAGAATGGTTGGAGCAAGAAAGCCTGTGGAGGGTTCGTTGGTGGCATTTGGGTACAGAGATTTGCAAAATGCAACGAAGAATTTCTCTGAGAAATTGGGAGGAGGAGGGTTTGGTTCTGTTTTCAAAGGAACATTGGGTGATTCCAGTGGGGTGGCAGTGAAGAAATTGGAAAGTATTAGCCAAGGAGAGAAACAGTTCCGAACAGAAGTTAGCACAATAGGGACAGTGCAACATGTTAATCTCGTTAGGCTCCGCGGATTCTGCTCCGAAGGTGCCAAAAGGTTACTAGTTTATGATTACATGCCAAATGGCTCCTTGGATTTCCATTTGTTCCATAACAAGAACTCTAAGGTGTTGGACTGGAAAATGAGATACCAAATTGCGTTGGGAACTGCAAGGGGATTGACTTATCTTCACGAGAAGTGTAGAGATTGTATCATACACTGTGATGTGAAGCCAGAAAACATTCTCCTAGATGCTGAATTTTGTCCCAAGGTTGCAGATTTTGGCCTGGCTAAGCTTGTTGGAAGGGATTTCAGCAGGGTCCTCACAACCATGAGAGGAACAAGAGGCTATCTTGCTCCAGAGTGGATTTCTGGGGTGGCTATCACAGCCAAAGCTGATGTGTACAGCTATGGAATGATGCTTTTTGAGTTTGTATCAGGTAGGAGGAACTCTGAGCCATCAGAAGATGGCAAAGTTACCTTCTTCCCTTCCTTTGCAGCAAATGTTGTTGTCCAAGGTGACAGTGTTGCTGGCCTGTTGGACCCTAGTTTGGAGGGTAATGCTGAGATCGAGGAAGTGACTAGAATAATAAAAGTTGCTTCATGGTGTATTCAAGACAATGAGGCTCAACGGCCAAGCATGGGTCAAGTGGTTCAAATCCTTGAGGGGATCTTGGAGGTGAATTTGCCTCCAATTCCAAGGTCCCTTCAAGTGTTTGTTGATAACCAGGAGAGTTTAGTTTTCTACACTGAATCAGACTCCACCCAAAGTTCCCAGGTGAAGAGCAACGTCTCAAAGACCTCCTCTTCTCATGCCATAAGTAACATCTCTTCAGCAAGCTCCAAGTCCTTGGGAGGAGAAAATTAG 2559 0.4373 MHRNPSTISFLISPYNHMRNPWFCISLLTLFFSLLTHNSLAALTNVSSNQTLTGDQTLLSKGEIFELGFFKPGNTSNYYIGIWYKKVTIQTIVWVANRDNPVSDKNTATLTISGGNLVLLDGSSNQVWSTNITSPRSDSVVVAVLRDSGNLVLTNRPNDASASDSDSLWQSFDHPTDTWLPGGKIKLDNKTKKPQYLTSWKNNEDPATGLFSLELDPKGSTSYLILWNKSEEYWTSGAWNGHIFSLVPEMRANYIYNFSFVTNENESYFTYSMYNSSIISRFVMDVSGQVKQFTWLENAQQWNLFWSQPRQQCEVYAFCGAFGSCTENSMPYCNCLPGFEPKSPSDWNLVDYSGGCERKTKLQCENLNPSNGDKDGFVAIPNIALPKHEQSVGSGNAGECESICLNNCSCKAYAFDSNGCSIWFDNLLNLQQLSQDDSSGQTLYVKLAASEFHDDKSKIGMIIGVVVGVVVGIGILLAILLFFVIRRRKRMVGARKPVEGSLVAFGYRDLQNATKNFSEKLGGGGFGSVFKGTLGDSSGVAVKKLESISQGEKQFRTEVSTIGTVQHVNLVRLRGFCSEGAKRLLVYDYMPNGSLDFHLFHNKNSKVLDWKMRYQIALGTARGLTYLHEKCRDCIIHCDVKPENILLDAEFCPKVADFGLAKLVGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEPSEDGKVTFFPSFAANVVVQGDSVAGLLDPSLEGNAEIEEVTRIIKVASWCIQDNEAQRPSMGQVVQILEGILEVNLPPIPRSLQVFVDNQESLVFYTESDSTQSSQVKSNVSKTSSSHAISNISSASSKSLGGEN* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1679 852 ProSiteProfiles PAN/Apple domain profile. 364 448 IPR003609 -
Gso12g1679 852 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 21 816 - -
Gso12g1679 852 CDD STKc_IRAK 521 788 - -
Gso12g1679 852 Pfam S-locus glycoprotein domain 234 343 IPR000858 GO:0048544
Gso12g1679 852 MobiDBLite consensus disorder prediction 821 852 - -
Gso12g1679 852 ProSitePatterns Protein kinases ATP-binding region signature. 521 544 IPR017441 GO:0005524
Gso12g1679 852 CDD PAN_AP_plant 360 448 - -
Gso12g1679 852 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 21 816 - -
Gso12g1679 852 ProSiteProfiles Protein kinase domain profile. 515 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1679 852 SMART ntp_6 372 447 IPR003609 -
Gso12g1679 852 SMART blect_4 49 175 IPR001480 -
Gso12g1679 852 ProSiteProfiles Bulb-type lectin domain profile. 43 166 IPR001480 -
Gso12g1679 852 Pfam D-mannose binding lectin 91 201 IPR001480 -
Gso12g1679 852 Gene3D Phosphorylase Kinase; domain 1 483 589 - -
Gso12g1679 852 SUPERFAMILY Protein kinase-like (PK-like) 501 815 IPR011009 -
Gso12g1679 852 Pfam PAN-like domain 372 429 IPR003609 -
Gso12g1679 852 PIRSF SRK 16 836 IPR024171 GO:0004674
Gso12g1679 852 SMART serkin_6 515 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1679 852 CDD B_lectin 49 175 IPR001480 -
Gso12g1679 852 Gene3D - 41 173 IPR036426 -
Gso12g1679 852 Pfam Protein kinase domain 518 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1679 852 SUPERFAMILY alpha-D-mannose-specific plant lectins 77 240 IPR036426 -
Gso12g1679 852 Gene3D Transferase(Phosphotransferase) domain 1 590 793 - -
Gso12g1679 852 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1679 Gso-Chr12 40428528 40431613 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1679 471 795 Receptor kinase-like Gene Family AT5G20050 42.222 5.25e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso12g1679 Pkinase 7.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1679 - - gmx:100810583 1526.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1679 12 40428528 40431613 Gso12g0854 12 9376474 9379485 PCT
Gso12g1679 12 40428528 40431613 Gso6g2471 6 46407918 46410930 PCT
Gso12g0854 12 9376474 9379485 Gso12g1679 12 40428528 40431613 PCT
Gso6g2471 6 46407918 46410930 Gso12g1679 12 40428528 40431613 PCT