Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1677 ATGAAGAACTGCGAGCTATGCAAGCTTCCAGCTAGGACCTTCTGCGAGTCGGACCAGGCTAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGAGCGAACTTCCTCGTCGCGAGACACACGCGCACGCTCCTCTGCCACGCGTGCCAGTCACTCACGCCGTGGAAGGCCTCCGGCTCTGCCCTCGGCAACACCGTCTCGCTGTGCCAGAGTTGCGCCGGCGGAACCACCGAACAGGGCCCAGAGAGCCAAGGAGGGAATGACGACGACGACATAGACACCGACGATGAGGATGACTACGATGACGATGGTGAGAGCGAGGAGAACGAGGTTGCAGCCGACGAGGAGGACGGAGACAACCAGGTTGTCCCTTGGTCCTCCGAGCCGCCGCCACCGTCCCCAAGCTCTTCCAGCAGCGAAGAGTCGATTAGCCGGTGCAACAACGTGGACGAGGTTTCAACCACATTGAAACGACGTCGCGAGAACGACGATTTTCAGGGTTCGAATTCGAATAATTGGAAATGTGAACGGAGCGAAGTGGACAGAGGATGTTGGTTGGCTCGGTTGCGGCGGAGAACCGCCGATGATGTGGCGGTTGAGCGACGGAGGGCTAGAGCGGCGTTTCCGTACGGTTGTTGTGATGATAGAGCATCTGAAGACGTTTGA 666 0.5901 MKNCELCKLPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHACQSLTPWKASGSALGNTVSLCQSCAGGTTEQGPESQGGNDDDDIDTDDEDDYDDDGESEENEVAADEEDGDNQVVPWSSEPPPPSPSSSSSEESISRCNNVDEVSTTLKRRRENDDFQGSNSNNWKCERSEVDRGCWLARLRRRTADDVAVERRRARAAFPYGCCDDRASEDV* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1677 221 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Gso12g1677 221 MobiDBLite consensus disorder prediction 137 151 - -
Gso12g1677 221 MobiDBLite consensus disorder prediction 84 117 - -
Gso12g1677 221 CDD Bbox1_BBX-like 4 45 - -
Gso12g1677 221 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 221 - -
Gso12g1677 221 MobiDBLite consensus disorder prediction 73 174 - -
Gso12g1677 221 PANTHER - 1 221 - -
Gso12g1677 221 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Gso12g1677 221 SMART bboxneu5 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1677 Gso-Chr12 40402357 40403801 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1677 2 118 C2C2-CO-like Transcription Factor Family AT4G27310 52.991 3.60e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso12g1677 zf-B_box 9.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1677 - - gmx:100809520 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1677 12 40402357 40403801 Gso11g3189 11 47695274 47696792 GST
Gso12g1677 12 40402357 40403801 Gso12g0851 12 9319001 9320164 PCT
Gso12g1677 12 40402357 40403801 Gso6g2473 6 46427418 46428491 PCT
Gso12g0851 12 9319001 9320164 Gso12g1677 12 40402357 40403801 PCT
Gso6g2473 6 46427418 46428491 Gso12g1677 12 40402357 40403801 PCT