Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1675 ATGAGAAGCAGTAATGAGGTTCTGTTCTCCTTCTTCCTTCTTCTTGCTTTGGTGTTATGCTTCCAACTCTGTTCCGCTGGAGATACTTTGAAGACTGGCCAGAAGATAACTCTGAACTCAATGGAGAACCTTGTTTCATCAAGTCGCACATTTGAGCTTGGCTTCTTTTCTTTAAATGATAGCAGCCGTGTTGTAAAAAGCTACTACTACTTGGGGATATGGTATCAGTTCAACCCACAAACAGTGGTATGGGTTGCCAATAGAGACAAGCCTGTTTTAGATTCTAGTGGTGTTTTTCGAATTGCAGAGGATGGAAATCTGGTGGTAGAAGGTGCGTCAAAAAGGCATTGGTCCTCTGTAATTGAAGCACCCTCGTCCACAAACAGAACACTGAAGCTCCTAGAATCAGGGAACCTAGTACTAATGGACGATAACTCGGGAACCAATAATTACCTGTGGCAGAGTTTCAAGAACCCAACAGACACGTTTCTTCCTGGCATGAAAATGGATGCAAGTTTAGCATTGACTTCATGGAGAAACTCCACTGACCCGGCAACTGGGAACTTCACCTTTAAGCTGCTTCACAATGATGAGAGACTAAACTACGCAGTGATTAACCATTCACAACTTTACTGGACAGCTGATGGACTCGACAGAGATGCTGATTCCCAAGTAGTATCTAATTTGTTGGGCAACACCACCACCCGGGGTACTGGGTCGCACAATTTTTCAGACCAAACCATCTTTACATCGAAGCCTTACAATTACAAGAAATCGAGGCTGGTAATGAATTCCAGTGGGGAGTTACAATTTCTCAAGTGGGACAAAGGGCAATGGGAAAAGCGCTGGTGGGGGCCAGCTGACGAGTGCGACATTCATGATTATTGCGGGAGCTTTGGCATATGTAACAGAAATAACAATATTAGCTGCAAATGTTTGCCGGGATTCGCTCCCAGTTCTGATCAGTCTGAGGGAGAGCTCCAAGGACATGGGTGTGTGAGAAAATCAATATCGTGTATCAACACCGACGTCACATTCCTCAACTTAACCAACATAAAAGTACGAAACCCAGACAATGAAATTTTTACAGAATCAGAAGCAGAATGCCAGTCCATTTGCATTAGCATGTGTCCCGATTCGCAATGCCAGGCATATTCATATAATACGTCTACATACAGTGATCGCGGTTACTTTACATGCAAAATCTGGACACAGACTTTATCTTCTCTTGTAGAGGAGTACGATCGTGGCCGTGATCTTTCTATCCTCGTTAAGAGATCAGATATAGCACCAACTGCAAAAACGTGTGAACCTTGCGGAACATATGAGATTCCTTATCCACTAAGCACTGGGCCAAACTGTGGAGATCCCATGTACAGCAAGTTCAATTGTACCAAATCGACAGGCCACGTTAACTTCATGATGCCCAAAGGAATATCATACCAGGTTACTAGGATCGAAGAAGATACCAGAACGTTTTTCATTCATACGGATGCTTCATATTCCTGTAGTTCCAAAAGAGATCAAAATAACACACCTAATTTTCCATTTAATGTAGTTGATTGCATACAAGATTTTGGAATAGTTAAATTCAGTTGGCAACCAGCACCAGAACCTCCCTGTAATAGGCCTATGGACTGCATGAATTGGCCCCATTCAACATGCAGAGAAACAAGTGAAGGAGGAACCAGGTGCCATTGTGATTTAAAATATAGGTGGAACAACTCAATCATGAGTTGCACCCAAGAGCCACCGAGCAATCGTTCATACAAACGACTGGCATTGATTCTTACAATAATTTTAATAAGCATTATTACTCTGGCATGCATAATAGTACTTGCAATTGTGCGGAGAAAGAAAAATGCCCCTAAGCCTGATCGGGCAAGCACCCAAATTCAGGAGAGCTTGTACGAGAGTGAAAGACACGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAGGACATTGAAGGAATTGAAGTACCCTGTTATACTTATGCAAGCATTCTAGCAGCTACAGATAATTTCTCAGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGACATAGCTGTAAAGAGGCTTTCAAGTGTTTCCACTCAAGGCTTAGAGGAATTCAAGAATGAGGTTATTTTGATTGCAAAACTTCAGCATCGAAACCTTGTTAGACTCAGGGGCTATTGCATTGAAGGAGATGAAAAAATCCTACTTTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCCGACACGAACTTCACTCCTGGATTGGCCAATACGATTTGAGATAATCGTAGGCATTGCGCGAGGCATGTTGTATCTTCACCAAGACTCCAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACATTCTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGGGGAAAAGAAACTGAAGCATGTACAGGGAGAGTAGTGGGAACCTATGGATACATGGCTCCAGAGTATGCCTTGGACGGATTCTTTTCAACCAAATCCGACGTTTTCAGCTTTGGAGTAGTCCTTCTAGAGATTCTTAGTGGAAAAAAGAACACTGGATTCTATCAGTCCAAGCAAATTTCTAGCCTTTTGGGTCATGCATGGAAGTTATGGACAGAGAATAAGCTACTGGATTTAATGGACCCATCTCTTTGTGAAACATGCAACGAAAATGAATTCATTAAGTGTGCAGTCATTGGACTCTTATGCGTACAAGATGAACCAAGTGATCGACCCACTATGTCAAATGTTTTGTTCATGCTCGACATAGAGGCAGCAAGCATGCCAATTCCCACGCAGCCAACCTTTTTTGTGAAAAAGCATCTTTCTAGCTCAGCTTCCTCTTCGAGCAAACCAGATGTAGGTCAGTTTGAGAGCAGTTATCAAGAAGGTCGATAG 2979 0.423 MRSSNEVLFSFFLLLALVLCFQLCSAGDTLKTGQKITLNSMENLVSSSRTFELGFFSLNDSSRVVKSYYYLGIWYQFNPQTVVWVANRDKPVLDSSGVFRIAEDGNLVVEGASKRHWSSVIEAPSSTNRTLKLLESGNLVLMDDNSGTNNYLWQSFKNPTDTFLPGMKMDASLALTSWRNSTDPATGNFTFKLLHNDERLNYAVINHSQLYWTADGLDRDADSQVVSNLLGNTTTRGTGSHNFSDQTIFTSKPYNYKKSRLVMNSSGELQFLKWDKGQWEKRWWGPADECDIHDYCGSFGICNRNNNISCKCLPGFAPSSDQSEGELQGHGCVRKSISCINTDVTFLNLTNIKVRNPDNEIFTESEAECQSICISMCPDSQCQAYSYNTSTYSDRGYFTCKIWTQTLSSLVEEYDRGRDLSILVKRSDIAPTAKTCEPCGTYEIPYPLSTGPNCGDPMYSKFNCTKSTGHVNFMMPKGISYQVTRIEEDTRTFFIHTDASYSCSSKRDQNNTPNFPFNVVDCIQDFGIVKFSWQPAPEPPCNRPMDCMNWPHSTCRETSEGGTRCHCDLKYRWNNSIMSCTQEPPSNRSYKRLALILTIILISIITLACIIVLAIVRRKKNAPKPDRASTQIQESLYESERHVKGLIGLGSLEEKDIEGIEVPCYTYASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQDIAVKRLSSVSTQGLEEFKNEVILIAKLQHRNLVRLRGYCIEGDEKILLYEYMPNKSLDSFIFDPTRTSLLDWPIRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEACTGRVVGTYGYMAPEYALDGFFSTKSDVFSFGVVLLEILSGKKNTGFYQSKQISSLLGHAWKLWTENKLLDLMDPSLCETCNENEFIKCAVIGLLCVQDEPSDRPTMSNVLFMLDIEAASMPIPTQPTFFVKKHLSSSASSSSKPDVGQFESSYQEGR* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1675 992 Pfam D-mannose binding lectin 81 172 IPR001480 -
Gso12g1675 992 ProSiteProfiles Bulb-type lectin domain profile. 29 154 IPR001480 -
Gso12g1675 992 Pfam S-locus glycoprotein domain 245 319 IPR000858 GO:0048544
Gso12g1675 992 Gene3D - 22 157 IPR036426 -
Gso12g1675 992 Gene3D Phosphorylase Kinase; domain 1 651 752 - -
Gso12g1675 992 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Gso12g1675 992 MobiDBLite consensus disorder prediction 970 992 - -
Gso12g1675 992 ProSiteProfiles PAN/Apple domain profile. 339 427 IPR003609 -
Gso12g1675 992 CDD B_lectin 37 159 IPR001480 -
Gso12g1675 992 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 18 990 - -
Gso12g1675 992 SMART blect_4 35 159 IPR001480 -
Gso12g1675 992 Pfam Protein tyrosine and serine/threonine kinase 680 945 IPR001245 GO:0004672|GO:0006468
Gso12g1675 992 SMART serkin_6 677 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1675 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 798 810 IPR008271 GO:0004672|GO:0006468
Gso12g1675 992 ProSiteProfiles Protein kinase domain profile. 677 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1675 992 CDD STKc_IRAK 683 949 - -
Gso12g1675 992 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 18 990 - -
Gso12g1675 992 SUPERFAMILY Protein kinase-like (PK-like) 660 948 IPR011009 -
Gso12g1675 992 Gene3D Transferase(Phosphotransferase) domain 1 753 955 - -
Gso12g1675 992 SMART ntp_6 341 424 IPR003609 -
Gso12g1675 992 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 184 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1675 Gso-Chr12 40370475 40387825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1675 667 978 Receptor kinase-like Gene Family AT4G23140 57.585 2.23e-126 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1675 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1675 - - gsj:114379027 1809.65