Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1674 ATGAGAACTGATGAGGTTCTGTTCTCCTTTTCTCTTTTTTCTTTGGTGTTATACTTCCAACTCTGTTCCACTGGAGATACTTTGAAGGCTGGCCAGAAGATAACTACGAACCCATTGGAGAACCTTGTTTCATCTAACCGCACATTTGAGCTTGGTTTCTTTCCTTTAAGTGGTAGCAGCAGTGTTGTAAAACGCTACTTGGGGATATGGTATCACGGGTTGGAACCACAAACAGTGGTATGGGTTGCCAATAGAGACAAGCCTGTTTTAGATTCTAGTGGTGTTTTTCGAATTGCAGAGGATGGAAATCTGGTGATAGAAGGTGCATCATCAGAAAGTTATTGGTCCTCTAAAATCGAAGCATATTCGTCTACAAACAGAACAGTGAAGCTCCTAGAATCAGGGAACCTAGTACTTATGGACGATAACTTGGGAAGGAGTAATTACACGTGGCAGAGCTTTCAACACCCAACAGACACGTTTCTTCCTGGCATGAAAATGGATGCAAGTGTAGCATTGACTTCATGGAGAAACTCCACTGACCCGGCACCTGGGAACTTCACCTTTACGATGGCTCCAGAGGACGAGAGGGGAAGCTTCGCAGTGCAAAAGCTATCACAAATCTACTGGGACCTTGACGAACTCGACAGAGATGTTAATTCCCAAGTAGTATCTAATTTGTTGGGCAACACCACCACCCGGGGTACTAGGTCGCACAATTTTTCAAACAAAACCGTCTATACATCGAAGCCTTACAATTACAAGAAATCGAGGCTGCTAATGAATTCCAGTGGGGAGTTACAATTTCTCAAGTGGGATGAGGATGAAGGGCAATGGGAAAAGCGCTGGTGGGGGCCAGCTGACGAGTGCGACATTCATGATTATTGTGGGAGCTTTGGCATATGTAACAGAAATAACCATATTGGCTGCAAATGTTTACCAGGATTCGCTCCCATTCCTGAGGGAGAGCTCCAAGGACATGGGTGTGTGAGAAAATCAACATCGTGTATCAACACCGACGTCACATTCCTCAACTTAACCAACATAAAAGTAGGAAACCCAGACCATGAAATTTTTACAGAAACAGAAGCAGAATGCCAGTCCTTTTGCATTAGCAAGTGTCCCCTTTGCCAGGCATATTCATATCATACGTCTACATACGGTGATCGCAGTCCCTTTACATGCAACATCTGGACACAGAATTTATCTTCTCTTGTAGAGGAGTACGATCGTGGCCGTGATCTTTCTATCCTCGTTAAGAGATCAGATATAGCACCAACTGCCAAAACGTGTGAACCTTGCGGGACATATGAGATTCCTTATCCACTAAGCACTGGGCCAAACTGTGGAGATCCCATGTACAACAAGTTCAATTGTACCAAATCGACAGGCCAAGTTAACTTCATGACACCCAAAGGAATATCATACCAGGTTACTAGGATCGAAGAAGATACCAGAACGTTTTTCATTCATACGAATGCTTCATATTCCTGTAGTTCCAGAAGAGATCAAAGTAACACACCTAACTTTCCATTTAATGTAGCTGAATGCATACCAGATGTTGGAGTTTTATTCCGTTGGCAACCAGCACCAGAACCTCCCTGTAATAGGCCTATGGACTGCATGAATTGGCCCTATTCAACATGCAGAGAAACAAGTGAAGGAGGAACCAGGTGCCATTGTGATTTAAAATATAGGTGGAACAACTCAATCATGAGTTGCACCCAAGAGCCACCGAGCAATCGTTCATACAAACGACTGGAATTGATTCTTACAATAATTTTAATAAGCACTATTACTCTGGCATGCATAATAGTACTTGCAATTGTGCGGAGAAAGAAAAATGCCCCTAAGCCTGATCGGGCAAGCACCCAAATTCAGGAGAGCTTGTACGAGAGTGAAAGACAAGTGAAAGGTTTGATAGGCTTAGGAAGTTTAGAAGAAAAGGACATTGAAGGAATTGAAGTACCCTGTTATACTTATGCAAGCATTCTAGCAGCTACAGATAATTTCTCAGATTCTAACAAGCTTGGAAGAGGAGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGACATAGCTGTAAAGAGGCTTTCAAGTGTTTCCACTCAAGGCTTAGAGGAATTCAAGAATGAGGTTATTTTGATTGCAAAACTTCAGCATCGAAACCTTGTTAGACTCAGGGGCTATTGCATTGAAGGAGATGAAAAAATCCTACTTTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCCGACACGAACTTCACTCCTGGATTGGCCAATACGATTTGAGATAATCGTAGGCATTGCGCGAGGCATGTTGTATCTTCACCAAGACTCCAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACATTCTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGGGGAAAAGAAACTGAAGCATGTACAGGGAGAGTAGTGGGAACCTATGGATACATGGCTCCAGAGTATGCCTTGGACGGATTCTTTTCAACCAAATCCGACGTTTTCAGCTTTGGAGTAGTCCTTCTAGAGATTCTTAGTGGAAAAAAGAACACTGGATTCTATCAGTCCAAGCAAATTTCTAGCCTTTTGGGTCATGCATGGAAGTTATGGACAGAGAATAAGCTACTGGATTTAATGGACCCATCTCTTTGTGAAACATGCAACGAAAATGAATTCATTAAGTGTGCAGTCATTGGACTCTTATGCGTACAAGATGAACCAAGTGATCGACCCACTATGTCAAATGTTTTGTTCATGCTCGACATAGAGGCAGCAAGCATGCCAATTCCCACGCAGCCAACCTTTTTTGTGAAAAAGCATCTTTCTAGCTCAGCTTCCTCTTCGAGCAAACCAGATGTAGGTCAGTTTGAGAGCAGTTATCAAGAAGGTCGATAG 2961 0.4265 MRTDEVLFSFSLFSLVLYFQLCSTGDTLKAGQKITTNPLENLVSSNRTFELGFFPLSGSSSVVKRYLGIWYHGLEPQTVVWVANRDKPVLDSSGVFRIAEDGNLVIEGASSESYWSSKIEAYSSTNRTVKLLESGNLVLMDDNLGRSNYTWQSFQHPTDTFLPGMKMDASVALTSWRNSTDPAPGNFTFTMAPEDERGSFAVQKLSQIYWDLDELDRDVNSQVVSNLLGNTTTRGTRSHNFSNKTVYTSKPYNYKKSRLLMNSSGELQFLKWDEDEGQWEKRWWGPADECDIHDYCGSFGICNRNNHIGCKCLPGFAPIPEGELQGHGCVRKSTSCINTDVTFLNLTNIKVGNPDHEIFTETEAECQSFCISKCPLCQAYSYHTSTYGDRSPFTCNIWTQNLSSLVEEYDRGRDLSILVKRSDIAPTAKTCEPCGTYEIPYPLSTGPNCGDPMYNKFNCTKSTGQVNFMTPKGISYQVTRIEEDTRTFFIHTNASYSCSSRRDQSNTPNFPFNVAECIPDVGVLFRWQPAPEPPCNRPMDCMNWPYSTCRETSEGGTRCHCDLKYRWNNSIMSCTQEPPSNRSYKRLELILTIILISTITLACIIVLAIVRRKKNAPKPDRASTQIQESLYESERQVKGLIGLGSLEEKDIEGIEVPCYTYASILAATDNFSDSNKLGRGGYGPVYKGTFPGGQDIAVKRLSSVSTQGLEEFKNEVILIAKLQHRNLVRLRGYCIEGDEKILLYEYMPNKSLDSFIFDPTRTSLLDWPIRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEACTGRVVGTYGYMAPEYALDGFFSTKSDVFSFGVVLLEILSGKKNTGFYQSKQISSLLGHAWKLWTENKLLDLMDPSLCETCNENEFIKCAVIGLLCVQDEPSDRPTMSNVLFMLDIEAASMPIPTQPTFFVKKHLSSSASSSSKPDVGQFESSYQEGR* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1674 986 Pfam D-mannose binding lectin 78 170 IPR001480 -
Gso12g1674 986 ProSiteProfiles Bulb-type lectin domain profile. 27 152 IPR001480 -
Gso12g1674 986 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 16 984 - -
Gso12g1674 986 MobiDBLite consensus disorder prediction 964 986 - -
Gso12g1674 986 Gene3D Transferase(Phosphotransferase) domain 1 747 949 - -
Gso12g1674 986 Pfam Protein tyrosine and serine/threonine kinase 674 939 IPR001245 GO:0004672|GO:0006468
Gso12g1674 986 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 984 - -
Gso12g1674 986 SMART blect_4 36 157 IPR001480 -
Gso12g1674 986 ProSiteProfiles Protein kinase domain profile. 671 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1674 986 SMART serkin_6 671 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1674 986 Gene3D Phosphorylase Kinase; domain 1 645 746 - -
Gso12g1674 986 Pfam PAN-like domain 336 404 IPR003609 -
Gso12g1674 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Gso12g1674 986 Gene3D - 20 155 IPR036426 -
Gso12g1674 986 SUPERFAMILY Protein kinase-like (PK-like) 654 942 IPR011009 -
Gso12g1674 986 CDD B_lectin 36 157 IPR001480 -
Gso12g1674 986 Pfam S-locus glycoprotein domain 243 318 IPR000858 GO:0048544
Gso12g1674 986 ProSiteProfiles PAN/Apple domain profile. 336 422 IPR003609 -
Gso12g1674 986 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 182 IPR036426 -
Gso12g1674 986 CDD STKc_IRAK 677 943 - -
Gso12g1674 986 SMART ntp_6 338 419 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1674 Gso-Chr12 40356729 40361083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1674 661 972 Receptor kinase-like Gene Family AT4G23140 57.585 2.79e-126 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso12g1674 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1674 - - gmx:100807714 1983.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1674 12 40356729 40361083 Gso11g3190 11 47703412 47708818 GST
Gso12g1674 12 40356729 40361083 Gso12g0850 12 9294865 9300317 PCT