LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g1672	ATGAGAACTGATGAGGTTCTGTTCTCCTTTTCTCTTTTTTCTTTGGTGTTATACTTCCAACTCTGTTCCACTGGAGATACTTTGAAGGCTGGCCAGAAGATAACTACGAACCCATTGGAGAACCTTGTTTCATCTAACCGCACATTTGAGCTTGGTTTCTTTCCTTTAAGTGGTAGCAGCAGTGATGTAAAAAGCTACTACTTGGGGATATGGTATCACGGGTTGGAACCACAAACAGTGGTATGGGTTGCCAATAGAGTCAAGCCTGTTCCAGATTCTAGTGGTGTTTTTCGAATTGCAGAGGATGGAAATCTGGTGATAGAAGCTGTATCAACAGAACGTTATTGGTCCTCTAAAATCGAAGCATCTTCGTCTACAAACAGAACAGTGAAGCTCCTAGAATCAGGGAACCTAGTACTAATGGACGATAACTTGGGAAGGAGTAATTACACGTGGCAGAGCTTTCAACACCCAACAGACACGTTTCTTCCTGGCATGAAAATGGATGCAAGTTTAGCATTGACTTCATGGAGAAACTCCACTGACCCGGCACCTGGGAACTTCACCTTTACGATGGCTCCAGAGGACGAGAGGGGAAGCTTCGTAGTGCAAAAGCAATCACAAATCTACTGGGACCTTGATGAACTCGACAGCAATGAGAATTCCCAAGTAGTATTTAATTTTTTGGGCAACACCGCCACCCGGGGTACTAGGTCGCACAATTTTTCAGACCAAACCATCTTTACATCGAAGCCTTACAATTACACGAAATCGAGGCTGCTAATGAATTCCAGTGGGGAGTTACAATTTCTCAAGTGGGATGAGCATGAATGGGAAAAGCGCTGGTCGGGGCCAGCTGACGAGTACGACATTCATGATTATTGCGGGAGCTTTGGCATATGTAACAGAAATAACCATATTGGCTGCAAATGTTTACCAGGATTCGCTCCCATTCCCGAGGGAGAGCTCCAAGGACATGGGTGTGTGAGAAAATCAATATCGTGTATCAACACCGACGTCACATTCCTCAACTTAACCAACATAAAAGTACGAAACCCAGACCATGAAATTTTTACAGAAACAGATGCAGAATGCCAGTCCTTTTGCATTAGCAAGTGTCCCCTTTGCCAGGCATATTCATATAATAGGTCAACATACAGTGATCGCAGTCCCTTTACATGCAACATCTGGACACACAATTTATCTTCTCTTGTAGAGGAGTACGATCGTGGCCGTGATCTTTCTATCCTCGTTAAGATATCAGATATAGCACCAACTGCAAAAACGTGTGAACCTTGCGGAACATATGAGATTCCTTATCCACTAAGCACTGGGCCAAACTGTGGAGATCTCATGTACAAGTTCAATTGTACCAAATCGACAGGCCAAGTTAACTTCATGATGCCCGAAGGAATATCATACCAGGTTACTAGGATCGAAGAAGATACCAGAACGTTTTTCATTCAAGCGGATGCTTCATATTCCTGTAGTCTCAGAAGAGATCAAAATAACACACCTAATTTTCCATTTAATGTAGTTGATTGCATACAAGATTTTGGAATAGTTAAATTCAGTTGGCAACCAGCACCAGAACCTCCCTGTAATAGGCCTATGGACTGCATGAATTGGCCCCATTCAACATGCAGAGAAACCAGGTGCCATTGTGATTTAAAATATAGGTGGAACAACTCTATCATGAGTTGCACCCAAGAAGAGCCGTCAAGAGAGCATTTAACCCACCGACTGGCATTGATTCTTACAGTAATTCTTGGTTCCATGGCTATTCTGGCATGCATAACAGCATTTGTGCTTGTGCGGAGAAAGAAAAAAGCTCATAAGCTTGATCGGGCAAGCACCCAAATTCAGGAAAGTTTGTATGAGAGCGAAAAACGTGTGAAAGGTTTGATTGGCTTAGGAAGTTTAGAAGAAAAAGATATTGAAGGAATTGAAGTTCCCTGTTATACTTTTGCAAGCATTCTAGCGGCCACAGATAATTTCACCGATTCTTACAAGCTTGGAAGAGGTGGTTATGGACCTGTTTATAAGGGAACGTTTCCTGGAGGTCAAGACATAGCTGTAAAGAGGCTTTCAAGTGTTTCCACTCAAGGCTTAGAGGAATTCAAGAATGAGGTTATTTTGATTGCAAAACTTCAGCATCGGAACCTTGTTAGACTCAGGGGCTATTGCATTAAAGGAGATGAAAAAATCTTACTTTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCGGACACGAACTTCACTCCTGGATTGGCCAATACGATTTGAGATAATCGTAGGCATTGCGCGAGGCATGTTGTATCTTCACCAAGACTCCAGATTGAGAGTGATTCATAGAGACCTGAAAACCAGCAACATTCTTCTAGATGAGGAGATGAATCCAAAGATATCAGACTTTGGTCTTGCCAAAATATTTGGGGGAAAAGAAACGGAAGCCAGTACAGAGAGAGTAGTGGGAACCTATGGATACATGGCTCCAGAGTATGCCTTGGACGGATTCTTTTCAATCAAATCCGACGTTTTCAGCTTTGGAGTAGTCCTTCTAGAGATTCTTAGTGGAAAAAGGAACACTGGATTCTATCAGTCCAAGCAAATTTCTAGCCTTTTGGGTCATGCATGGAAGTTATGGACAGAGAATAAGCTACTGGATTTAATGGACCCATCTCTTTGTGAAACATGCAACGAAAATGAATTCATTAAGTGTGCAGTCATTGGACTCTTATGCGTACAAGATGAACCAAGTGATCGACCCACTATGTCAAATGTTTTGTCAATGCTTGACATAGAGGCAGTAACCATGCCAATTCCCACGCCACCAACCTTTTTTGTGAACAAGCGTCATTCTAGCTCAGCTTCCTCTTCTAGCAAACCAGATATAGGTCAGTTTGAGAGCAGTTATCAAGAAGGTCGATAG	2946	0.424	MRTDEVLFSFSLFSLVLYFQLCSTGDTLKAGQKITTNPLENLVSSNRTFELGFFPLSGSSSDVKSYYLGIWYHGLEPQTVVWVANRVKPVPDSSGVFRIAEDGNLVIEAVSTERYWSSKIEASSSTNRTVKLLESGNLVLMDDNLGRSNYTWQSFQHPTDTFLPGMKMDASLALTSWRNSTDPAPGNFTFTMAPEDERGSFVVQKQSQIYWDLDELDSNENSQVVFNFLGNTATRGTRSHNFSDQTIFTSKPYNYTKSRLLMNSSGELQFLKWDEHEWEKRWSGPADEYDIHDYCGSFGICNRNNHIGCKCLPGFAPIPEGELQGHGCVRKSISCINTDVTFLNLTNIKVRNPDHEIFTETDAECQSFCISKCPLCQAYSYNRSTYSDRSPFTCNIWTHNLSSLVEEYDRGRDLSILVKISDIAPTAKTCEPCGTYEIPYPLSTGPNCGDLMYKFNCTKSTGQVNFMMPEGISYQVTRIEEDTRTFFIQADASYSCSLRRDQNNTPNFPFNVVDCIQDFGIVKFSWQPAPEPPCNRPMDCMNWPHSTCRETRCHCDLKYRWNNSIMSCTQEEPSREHLTHRLALILTVILGSMAILACITAFVLVRRKKKAHKLDRASTQIQESLYESEKRVKGLIGLGSLEEKDIEGIEVPCYTFASILAATDNFTDSYKLGRGGYGPVYKGTFPGGQDIAVKRLSSVSTQGLEEFKNEVILIAKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDRTRTSLLDWPIRFEIIVGIARGMLYLHQDSRLRVIHRDLKTSNILLDEEMNPKISDFGLAKIFGGKETEASTERVVGTYGYMAPEYALDGFFSIKSDVFSFGVVLLEILSGKRNTGFYQSKQISSLLGHAWKLWTENKLLDLMDPSLCETCNENEFIKCAVIGLLCVQDEPSDRPTMSNVLSMLDIEAVTMPIPTPPTFFVNKRHSSSASSSSKPDIGQFESSYQEGR*	982

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso12g1672	981	SUPERFAMILY	Protein kinase-like (PK-like)	651	961	IPR011009	-
	Gso12g1672	981	CDD	B_lectin	36	158	IPR001480	-
	Gso12g1672	981	Pfam	Protein tyrosine and serine/threonine kinase	670	937	IPR001245	GO:0004672\|GO:0006468
	Gso12g1672	981	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	787	799	IPR008271	GO:0004672\|GO:0006468
	Gso12g1672	981	ProSiteProfiles	Protein kinase domain profile.	666	953	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso12g1672	981	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	16	979	-	-
	Gso12g1672	981	Pfam	S-locus glycoprotein domain	244	317	IPR000858	GO:0048544
	Gso12g1672	981	CDD	STKc_IRAK	672	938	-	-
	Gso12g1672	981	MobiDBLite	consensus disorder prediction	957	981	-	-
	Gso12g1672	981	Pfam	D-mannose binding lectin	79	171	IPR001480	-
	Gso12g1672	981	Gene3D	Phosphorylase Kinase; domain 1	640	741	-	-
	Gso12g1672	981	SUPERFAMILY	alpha-D-mannose-specific plant lectins	80	183	IPR036426	-
	Gso12g1672	981	ProSiteProfiles	PAN/Apple domain profile.	335	421	IPR003609	-
	Gso12g1672	981	Gene3D	Transferase(Phosphotransferase) domain 1	742	943	-	-
	Gso12g1672	981	ProSiteProfiles	Bulb-type lectin domain profile.	27	153	IPR001480	-
	Gso12g1672	981	SMART	blect_4	36	158	IPR001480	-
	Gso12g1672	981	PANTHER	S-LOCUS LECTIN KINASE FAMILY PROTEIN	16	979	-	-
	Gso12g1672	981	Gene3D	-	20	156	IPR036426	-
	Gso12g1672	981	SMART	serkin_6	666	937	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g1672	Gso-Chr12	40328856	40333312	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g1672	656	957	Receptor kinase-like Gene Family	AT4G23140	57.792	7.61e-123	388

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso12g1672		PK_Tyr_Ser-Thr	6.3e-45	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g1672	-		-	gmx:100807185	1867.82