Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1668 ATGCAGATGTTAGCGAAAACCCATAACAAAGGGGATGGATCTAAGTCCCTGGCTAAGATACTGGCAAAATGGAAAGAATATAATGCCCAGATTGATTCCAGCAGTGATGCGGATAAGCCAGTTCGCAAAGTTCCTGCCAAGGGATCGAAGAAGGGGTGCATGAAAGGTAAAGGGGGCCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAAAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCAAACAGAGGCAATAGGCTTTGGCTAGGTACTTTCCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCGGCCAGGGCAATGTACGGTTCCTGTGCCCGTCTCAACTTTCCCAATGTTTCAGTTTCCAGTTTCTCTGAAGAATCTTCCAAAGATTCTCCGGTTGCGAATCATTGTGGTTCGTCAATGGCAGTGTCTGCAAACGAGTCCATGATTTCACCAAGTAACTCGGGGGTAGGTGCAGAAGATGATGTTGATATGGAGCCCATTTCCTTATCCTTAACAGTAAAGCATGAGAATGGGGAAGGTGAATCGGGGATAAGTTCTTCCCCTCCTTCCCCATGA 600 0.4833 MQMLAKTHNKGDGSKSLAKILAKWKEYNAQIDSSSDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPNVSVSSFSEESSKDSPVANHCGSSMAVSANESMISPSNSGVGAEDDVDMEPISLSLTVKHENGEGESGISSSPPSP* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1668 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 171 - -
Gso12g1668 199 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Gso12g1668 199 MobiDBLite consensus disorder prediction 151 175 - -
Gso12g1668 199 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gso12g1668 199 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Gso12g1668 199 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Gso12g1668 199 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Gso12g1668 199 MobiDBLite consensus disorder prediction 180 199 - -
Gso12g1668 199 MobiDBLite consensus disorder prediction 32 61 - -
Gso12g1668 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 171 - -
Gso12g1668 199 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Gso12g1668 199 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Gso12g1668 199 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1668 Gso-Chr12 40276622 40278450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1668 10 134 AP2-EREBP Transcription Factor Family AT2G40340 56.944 8.99e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso12g1668 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1668 - - gmx:100527471 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1668 12 40276622 40278450 Gso11g3194 11 47744766 47746564 GST
Gso12g1668 12 40276622 40278450 Gso12g0844 12 9201590 9203442 PCT
Gso12g1668 12 40276622 40278450 Gso6g2476 6 46482679 46484832 PCT
Gso12g0844 12 9201590 9203442 Gso12g1668 12 40276622 40278450 PCT
Gso6g2476 6 46482679 46484832 Gso12g1668 12 40276622 40278450 PCT