Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1664 ATGCACGTCACGTCGTCACAAAGCCACATGAAAGCCGAGCTAAAGGGCACGACGTCCATTTCCTTTCAAAACCCTACCACCACTCTCTTCAACAACCCTCTCTCGGGAGCACTCAAAGGGTGCCTCGGAAGCCTCGATGGGGCATGTATTGAGAAGCTCTTGCTCCACTGTGCCAGTGCTTTGGAGAGCAATGACGTCACCTTGGCTCAACAAGTCATGTGGGTGCTCAACAACGTTGCTTCCCCTGTGGGGGACACTAACCAAAGGCTCACCTCGTGGTTCCTAAGGGCCTTAATCTCCAGGGCTTCAAGAATTTGCCCCACTGCCATGAGTTTCAAAGGAAGCAACACCATTCAAAGGAGGTTGATGAGCGTCACCGAGCTTGCCGGGTATGTGGATCTAATTCCTTGGCATAGGTTTGGTTATTGTGCATCCAACAATGAGATTTACAAAGCAATAACGGGGTTCCAAAGGGTGCATATTGTAGATTTTAGCATAACTCATTGTATGCAATGGCCTACTTTTATAGATGCTTTAGCAAAAAGGCCCGAAGGACCCCCTTCACTTAGAATCACGGTTCCATCTTGTAGACCACATGTACCCCCCTTGGTCAATATATCAATACATGAAGTTGGGTTACGTTTAGGAAATTTTGCTAAGTTCAGAGATGTCCCTTTTGAATTCAATGTTATAGGAAATACAGGACCATTAACAACAGCGGAATTGAGTGATGAATCAACTAATTTTCACTTTGAAGCAATGTTAAGTCTCTTGAATCCTACCATGCTAAACCTTAGGGAAGATGAGGCTTTGGTCATAAACTGCCAAAATTGGCTACGCTATTTGTCTGATGATAGAAAGGGAATTAGCCGCCAAAGTCTGTCGCTTAGGGATGCTTTTTTGAATATAATCAAAGGTCTTAACCCCCGGATTGTGCTCTTGGTTGATGAAGATTGTGATCTTAGTGCATCAAGTCTCACATCAAGAATAACCACATGTTTTAACCATATGTGGATACCCTTTGATGCATTGGAGACTTTTTTGCCCAAAGATAGTTGTCAGAGGTCAGAGTTTGAATCCGACATAGGCCAGAAGATTGAGAACATCATAAGCTACGAAGGGCACCAAAGAATAGAGAGGTCGGAATCTGGGGTGCAAATGTCCCAAAGAATGAAAAATGTGGGCTACCTCAGTGTTCCATTTTGTGATGAAACTGTTAGGGAAATAAAAGGTTTGCTAGATGAGCATGCTAGTGGGTGGGGGATGAAAAGAGAAGAAGGTATGTTAGTTCTCACGTGGAAAGGAAACAGCTGTGTGTTTGCGACAGCTTGGGTCCCTTGTGAAATGAGGGATCATATCGGCATTGATGCAGGCCTGTCTTAA 1383 0.444 MHVTSSQSHMKAELKGTTSISFQNPTTTLFNNPLSGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPVGDTNQRLTSWFLRALISRASRICPTAMSFKGSNTIQRRLMSVTELAGYVDLIPWHRFGYCASNNEIYKAITGFQRVHIVDFSITHCMQWPTFIDALAKRPEGPPSLRITVPSCRPHVPPLVNISIHEVGLRLGNFAKFRDVPFEFNVIGNTGPLTTAELSDESTNFHFEAMLSLLNPTMLNLREDEALVINCQNWLRYLSDDRKGISRQSLSLRDAFLNIIKGLNPRIVLLVDEDCDLSASSLTSRITTCFNHMWIPFDALETFLPKDSCQRSEFESDIGQKIENIISYEGHQRIERSESGVQMSQRMKNVGYLSVPFCDETVREIKGLLDEHASGWGMKREEGMLVLTWKGNSCVFATAWVPCEMRDHIGIDAGLS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1664 460 PANTHER OS05G0500600 PROTEIN 11 446 - -
Gso12g1664 460 ProSiteProfiles GRAS family profile. 41 445 IPR005202 -
Gso12g1664 460 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 446 IPR005202 -
Gso12g1664 460 Pfam GRAS domain family 51 444 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1664 Gso-Chr12 40232320 40234410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1664 33 446 GRAS Transcription Factor Family AT3G49950 45.390 9.81e-121 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gso12g1664 GRAS 3.2e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1664 - - gmx:100805056 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1664 12 40232320 40234410 Gso11g3197 11 47782587 47784638 GST