Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1662 ATGTTTTCCGGCGATGGCTCCTCCATGGACCCGATGTTTTCCGGCATGAGTCTGCAATCTCTTCTGTCTATGAACCCTTCCCTCTTCGAGGACGGGTTCCCCACTTTGTCCTCCCTAACCGACGACGTCCCAACCCTAATAATCCCCCAATCCACAGAGCTGAACCACACCAACGCCAACACCAAACTCCCGATTCCGAAAACCGAACCCTTAAACTTCTTCCCCCAATACCAGCTCCCTCCCCTCTGCTCGCCGGAGCCGAAGCGGCAGCGCCTGGAGTCTCCTCCGGTAATCCCGCAGAGCAGCCTGGCTAGGCAACGGCGTCAGAAGCTTAGCGAGAAAACGCGGTATCTCCAGAAGCTGATGCCGTGGGACAAGAAAATGGACCAAGCAACGCTTCTGGAAGAAGCTTACAAATACGTCAAGTTCCTCCAGGCACAATCCCGTGTCCTTCACTCCATGCCCTCTCACTCTCACTCTCACTCTCAGTTCTGCCAAAACGGTGCCGCTTTCGGCGACCTCGAGAAGCTGAACCGCAGCCAGGCTCTCCAGGTGCTGGTGAACTCCCCCGTGGCGCAGACCATGCTTTACTCCCAAGGCTTCTGCGTTTTCTCCCTCGAACAGCTTTCTCTCCTCAGAAAACTCTCCCAAACGAGGCAACAACAACAACACATGCCGCCAGATCCTGCTTCCTCCTCCAGAACTTTCTTCAACTAA 717 0.5523 MFSGDGSSMDPMFSGMSLQSLLSMNPSLFEDGFPTLSSLTDDVPTLIIPQSTELNHTNANTKLPIPKTEPLNFFPQYQLPPLCSPEPKRQRLESPPVIPQSSLARQRRQKLSEKTRYLQKLMPWDKKMDQATLLEEAYKYVKFLQAQSRVLHSMPSHSHSHSQFCQNGAAFGDLEKLNRSQALQVLVNSPVAQTMLYSQGFCVFSLEQLSLLRKLSQTRQQQQHMPPDPASSSRTFFN* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1662 238 Gene3D - 100 164 IPR036638 GO:0046983
Gso12g1662 238 MobiDBLite consensus disorder prediction 217 238 - -
Gso12g1662 238 PANTHER TRANSCRIPTION FACTOR BHLH117 54 227 - -
Gso12g1662 238 Pfam Helix-loop-helix DNA-binding domain 105 145 IPR011598 GO:0046983
Gso12g1662 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 144 IPR011598 GO:0046983
Gso12g1662 238 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 54 227 IPR045843 GO:0003700|GO:0006355
Gso12g1662 238 MobiDBLite consensus disorder prediction 84 108 - -
Gso12g1662 238 SMART finulus 101 150 IPR011598 GO:0046983
Gso12g1662 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 162 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1662 Gso-Chr12 40197287 40198003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1662 107 217 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 45.614 1.45e-24 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g1662 HLH 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1662 - - gmx:102666676 471.085