Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1658 ATGGACATGAATTCCTCAGGTGGTGCCTGCGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTTCTGACTTCATGGCTTCAGACTCTGGTGGTTTCAGTTGGGGGCCCCAGAGTTACAACTTCAAGGGTCCTTCAAATATGAGCTTGGAAATGGAATACTCACTGGATTCAACTGTCATGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAATCATGTGCATCTGGCTCCAAGGCATGTCGTGAGAAATTGCGAAGGGATAAACTTAATGAGAGGTTTCTGGAATTGAGTTCGATCTTGGAGCCTGGTAGACAGCCCAAAACAGACAAAGTTGCATTATTAAGCGATGCGGCTCGAGTGGTAATCCAATTGAGAAATGAAGCCGAGAGGCTGAAGGAAATGAATGATGAATTACAGGCAAAAGTTAAAGAATTGAAGGGTGAGAAGAATGAGCTTCGTGATGAGAAGAATAGGCTGAAGGAAGAGAAAGAAAAGTTGGAGAAGCAAGTGAAACTGACAAATATACAACCCAGCTTCCTACCTCAAGCCCCAGATGCTAAAGGGCAAGTTGGTAGCCACAAGCTGATACCTTTCATTGGATACCCTGGAATTGCCATGTGGCAGTTTATGTCCCCTGCTGCAGTTGATACTTCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 696 0.4468 MDMNSSGGACGWLYDYGFDIPVAGSDFMASDSGGFSWGPQSYNFKGPSNMSLEMEYSLDSTVMENGPSKRLRTESCASGSKACREKLRRDKLNERFLELSSILEPGRQPKTDKVALLSDAARVVIQLRNEAERLKEMNDELQAKVKELKGEKNELRDEKNRLKEEKEKLEKQVKLTNIQPSFLPQAPDAKGQVGSHKLIPFIGYPGIAMWQFMSPAAVDTSKDHLLRPPVA* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1658 231 PANTHER BHLH TRANSCRIPTION FACTOR 1 231 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Gso12g1658 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 150 IPR036638 GO:0046983
Gso12g1658 231 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Gso12g1658 231 SMART finulus 82 133 IPR011598 GO:0046983
Gso12g1658 231 CDD bHLH_AtILR3_like 81 156 - -
Gso12g1658 231 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 1 231 - -
Gso12g1658 231 Coils Coil 117 179 - -
Gso12g1658 231 Gene3D - 69 126 IPR036638 GO:0046983
Gso12g1658 231 Gene3D arf6 gtpase in complex with a specific effector, jip4 127 178 - -
Gso12g1658 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1658 Gso-Chr12 40169140 40171402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1658 34 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 56.938 1.20e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g1658 HLH 2.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1658 - - gmx:100806838 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1658 12 40169140 40171402 Gso11g3202 11 47835741 47837923 GST