Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1655 ATGGATCCTCTATGTGAGTTTTGTGGGGTGGTGAGAGCTGTGGTTTACTGCAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCTGTGTACACTCTGCAAATTCTTTGTCTCGCAGGCATTCGCGTTCCCTCCTCTGCGATAAGTGCAATTCCCAGCCGGCAATGATCCGCTGCATGGATCATAAGTTGTCATTGTGCCAAGGTTGTGACTGGAATCCAAATGACTGTTCTGCATTGGGACATAGGCGTGTTGCATTGAATTGTTACACTGGTTGTCCCTCTTTGGCTGAGTTTTCCAGGATTTGGTCCTTTGTGTTTGATGCTAATTCCTCACTTGGTGGTTGGGAATCGGTTGGTACTTTGCCAAAAAGTGAGAGCTGCACTAGCCAGTGTTTGGAGCAAACTGATCATAACGGTGGTTCCTTTGGTTTGGTGAGTGACAAGTTGGATGAAATTGAATCTTGTGTCATATATGAACCTTGGATGGGGCAGTCTCAAATCATTCCATCAAATCCAAATTACACGCCGTTCTGCAAAGACGAAGCATTTTTCTTTCCTCAAGACTCAAACCAGCCAAAGCTGCAGGAATGTCCTAATCTAGGAATTCATGATGGGAGTGAACTTTGTGAAGGTTTCAATGTTGATAACCTTCAATTAAACTTTGAAAGTGCTGATGAAATATTTGGCTGTTCACAAGATGCCACAAGATACCACCTTGAAGATGGAGGAATGGACTGTTTATTGATGGATAAAAACATATCAGTCACAGAATCTAATTCACTTATTGAGAGTGCCTTGGAGGCATCATCATCTATCCAACAAGATTGTGTGGCTTTTCAATCATCCAGGGCTGGTGGGTCAGCTAGTGTGATGCAGGTTATCAACAGCAATACAAATTGTGCACTAATGAATCCTAGCTGCACTAGAAACATCAGTCTGGGATTTCCTCAGGGTGTTCATTCAAAGATGCCACTTCAATTTCCCAACATTGTTGGTGAAAATAATTCTACTGAATATCAAGACTGCAGGTTTTCGCAAGTGTTTCTGCCGGGTGAATCCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAAGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAATGTTTGGTAAGCAAATAAGATATGCTTCTCGCAAAGCAAGGGCCGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGGGACAAGGGACATCTAA 1278 0.428 MDPLCEFCGVVRAVVYCKSDSARLCLHCDGCVHSANSLSRRHSRSLLCDKCNSQPAMIRCMDHKLSLCQGCDWNPNDCSALGHRRVALNCYTGCPSLAEFSRIWSFVFDANSSLGGWESVGTLPKSESCTSQCLEQTDHNGGSFGLVSDKLDEIESCVIYEPWMGQSQIIPSNPNYTPFCKDEAFFFPQDSNQPKLQECPNLGIHDGSELCEGFNVDNLQLNFESADEIFGCSQDATRYHLEDGGMDCLLMDKNISVTESNSLIESALEASSSIQQDCVAFQSSRAGGSASVMQVINSNTNCALMNPSCTRNISLGFPQGVHSKMPLQFPNIVGENNSTEYQDCRFSQVFLPGESPWESNLEGTCPQARDKAKMRYNEKKKTRMFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLGTRDI* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1655 425 CDD Bbox1_BBX-like 4 47 - -
Gso12g1655 425 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Gso12g1655 425 Pfam CCT motif 369 411 IPR010402 GO:0005515
Gso12g1655 425 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Gso12g1655 425 SMART bboxneu5 1 47 IPR000315 GO:0008270
Gso12g1655 425 ProSiteProfiles CCT domain profile. 369 411 IPR010402 GO:0005515
Gso12g1655 425 PANTHER CCT MOTIF FAMILY PROTEIN-RELATED 3 422 - -
Gso12g1655 425 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1655 Gso-Chr12 40147409 40151886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1655 1 419 C2C2-CO-like Transcription Factor Family AT3G21880 42.353 5.90e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso12g1655 CCT 5.4e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1655 - - gmx:100804738 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1655 12 40147409 40151886 Gso11g3210 11 47877388 47881409 GST