Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1651 ATGGACTCCATTTGCCCTATTGGGTTGCAGTGTGCCACTGAAATCTCTGCTCTTCTCTCTCCTCCCTCTCCTCTTCAAGTTCAGAAATATTATCACGACCTTTTGACTGCAAGAGGGTGCAGTGGTATCAAAGTCAAACAGGATGGCAACTTTGGAAAAGGTTTATATGCAGACATGGACTTCAAAGAGGGGGAACTGGTTCTGAAGGACCCCATGCTTGTAGGAGCTCAACATCCCCTCAACAAGATTGATTGTTTGGTGTGTAGCTTCTGCTTTTGTTTTATTGGTTCCATAGAACTTCAAATTGGAAGGAGGCTTTACATGCAACAACTAAGGGCCAATGAGAGTCATGGTTGTGAAGTGGGAAGCTCTTCAAAACACTGTCATGAAATGGATTCTTCTGATGAAGAGGAGAGCACACAACAATGTACTTCTGGTAGTTCCAAAACTAAAGTTCCTCTCCCTGAAGGTATTGTGGAATCGTTAATGAACGGCCAATTGGTGTTGCCTTTCTCCGAGAAGTTTTCCTTGCCGCCAGCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGGATCCTCCCATTCTTTACTCTGTACTGGTGAGAGTTCTGATTCAGCTCGTAGAGAGGCACTTCTTAAATTCATCAAACATGCTAATGAAACAAATGATATATTCCTCCTTGCTGCAAAGGCCATTTCTTCTACCATGCTAATGTACCGCAAATTAAAAGCAGTCAGTCTTGAAGAGCAAATGAAACACAATACATCCTGTGTTTCGAACCACTGTAACTTATCTATTCTTTTGGAAGCTTGGAAGCCTATATCAATGGGACACAAGAGAAGGTGGTGGGACTGTATTGCTTTGCCAGATGATGTTGATTCTTCTGATGAAGCTTCATTCAGGCTGCAAATAAAAATGTTGGCATTTGAGTCTCTCCAACTTCTTAAGACAGCCATATTTGACAAAGAATTATTCTCCCTTGAAATCTATGGAAATATCATCGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTAGCTTCTCCTGTGGAGGATTACTTTTTATATATTGATGATCTGACATATCCTAATAAGGAAGAAGCTGAGAAAATTACGCAACCGGTTCTGGATGCTCTTGGTGAAGAGTATTCTATTTATTGCGAAGGAACTGCATTTTTTCCTTTGCAAAGCTGCTTGAACCATTCCTGTTGTCCTAATGCCAAGGCTTTCAAAAGAGAGGAGGATAAAGATGGTCAAGCAACAATAATTGCACAGAGGTCCATTTGTAAAGGAGAAGAGATAACCATATCATATGTTGATGAGGACCTTACATTTGAAGAGCGACAAGCATCCCTTGCAGATTATGGTTTCAGATGCAGGTGTTCAAAGTGCATTGAAGAAGAGCCATAA 1446 0.4149 MDSICPIGLQCATEISALLSPPSPLQVQKYYHDLLTARGCSGIKVKQDGNFGKGLYADMDFKEGELVLKDPMLVGAQHPLNKIDCLVCSFCFCFIGSIELQIGRRLYMQQLRANESHGCEVGSSSKHCHEMDSSDEEESTQQCTSGSSKTKVPLPEGIVESLMNGQLVLPFSEKFSLPPAVPCPGGCGEAYYCSMSCAEADWGSSHSLLCTGESSDSARREALLKFIKHANETNDIFLLAAKAISSTMLMYRKLKAVSLEEQMKHNTSCVSNHCNLSILLEAWKPISMGHKRRWWDCIALPDDVDSSDEASFRLQIKMLAFESLQLLKTAIFDKELFSLEIYGNIIGMFELNNLDLVVASPVEDYFLYIDDLTYPNKEEAEKITQPVLDALGEEYSIYCEGTAFFPLQSCLNHSCCPNAKAFKREEDKDGQATIIAQRSICKGEEITISYVDEDLTFEERQASLADYGFRCRCSKCIEEEP* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1651 481 Gene3D - 122 215 - -
Gso12g1651 481 SUPERFAMILY HIT/MYND zinc finger-like 185 211 - -
Gso12g1651 481 CDD SET_SMYD 387 476 - -
Gso12g1651 481 ProSiteProfiles SET domain profile. 41 451 IPR001214 GO:0005515
Gso12g1651 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 480 IPR044237 GO:0008168
Gso12g1651 481 Gene3D SET domain 373 480 IPR046341 -
Gso12g1651 481 MobiDBLite consensus disorder prediction 122 136 - -
Gso12g1651 481 SUPERFAMILY SET domain 41 474 IPR046341 -
Gso12g1651 481 Pfam MYND finger 182 210 IPR002893 -
Gso12g1651 481 Pfam SET domain 52 450 IPR001214 GO:0005515
Gso12g1651 481 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1651 Gso-Chr12 40117166 40123838 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gso12g1651 SET 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1651 - - gmx:100803651 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1651 12 40117166 40123838 Gso11g3214 11 47904656 47909324 GST