Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1648 ATGGCTGACTCGGATCGCTCTTCTAGTGAAGTTTCTACACATTCTACTGATTCAGGGAAGCGAGGGTCTTCCAAAGTTGAATTTTCTGAAGATGAGGAAACTCTTATCATCAGGATGTATAAACTGGTAGGGGAGAGGTGGTCTTTAATTGCTGGAAGGATTCCTGGAAGAACAGCAGAGGAAATAGAGAAGTATTGGACTTCAAGATTCTCAGGTTCTAGTGAATGA 228 0.4211 MADSDRSSSEVSTHSTDSGKRGSSKVEFSEDEETLIIRMYKLVGERWSLIAGRIPGRTAEEIEKYWTSRFSGSSE* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1648 75 MobiDBLite consensus disorder prediction 1 19 - -
Gso12g1648 75 Pfam Myb-like DNA-binding domain 25 67 IPR001005 -
Gso12g1648 75 Gene3D - 27 70 - -
Gso12g1648 75 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 74 IPR017930 -
Gso12g1648 75 CDD SANT 27 66 IPR001005 -
Gso12g1648 75 ProSiteProfiles Myb-like domain profile. 20 70 IPR001005 -
Gso12g1648 75 SMART sant 24 72 IPR001005 -
Gso12g1648 75 SUPERFAMILY Homeodomain-like 25 70 IPR009057 -
Gso12g1648 75 MobiDBLite consensus disorder prediction 1 28 - -
Gso12g1648 75 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 73 - -
Gso12g1648 75 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1648 Gso-Chr12 40079565 40081091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1648 20 71 MYB Transcription Factor Family AT5G14750 53.846 2.80e-16 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso12g1648 Myb_DNA-binding 8.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1648 - - gmx:100801532 138.272
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1648 12 40079565 40081091 Gso11g3219 11 47936363 47937824 GST