Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1643 ATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGAGATCAAGAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGATATTGTCGTGGATAATTGCGCTATTTGTCGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAACCAGGCTAGCGCCACTAGCGAGGAATGCACTGTAGCTTGGGGAGTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAGTGTTTTGTTTTTTTGGTGGTATAGATAATAGCGAGTGGGAATTTCAGAAATACGGTCACTAG 381 0.5039 MATLDSDVTVFPAGEASSSAGPSSSTKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLVFCFFGGIDNSEWEFQKYGH* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1643 126 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 126 - -
Gso12g1643 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 126 IPR013083 -
Gso12g1643 126 Pfam RING-H2 zinc finger domain 50 106 IPR024766 GO:0008270
Gso12g1643 126 PANTHER RING BOX 1 126 - -
Gso12g1643 126 SUPERFAMILY RING/U-box 30 122 - -
Gso12g1643 126 CDD mRING-H2-C3H2C2D_RBX1 50 119 - -
Gso12g1643 126 ProSiteProfiles Zinc finger RING-type profile. 63 106 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1643 Gso-Chr12 40035819 40038124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1643 85 116 C3H Transcription Factor Family AT5G17600 53.125 2.04e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1643 K03868 - gmx:100798515 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1643 12 40035819 40038124 Gso11g3224 11 47971845 47974145 GST
Gso12g1643 12 40035819 40038124 Gso12g0825 12 8785643 8788640 PCT
Gso12g1643 12 40035819 40038124 Gso6g2494 6 46696918 46700035 PCT
Gso12g0825 12 8785643 8788640 Gso12g1643 12 40035819 40038124 PCT
Gso6g2494 6 46696918 46700035 Gso12g1643 12 40035819 40038124 PCT