Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1642 ATGCCAGCTGGTATTATGATTCCAGCAAGAAACATGCCCTCGATGATTGGAAGAAACGGAACCGTTGGTGGCTTTGGATTATCTTCAGGGCTCTCTCTTGGCCATCCAAACCTGATGGAAGCTGGTCAGCTCCACCCACTGGACATGCCTCAGAACACTTCAGAGAGCGATGTCCCTAGAATCCGTGAAGATGACTTTGACAGTGCCACCAAGTCAGGTAGTGAAAATCTAGAAGGTGCTTCCGGTGAAGACCAAGACCCTCGTCCCAACAAGAAGAAACGCTACCACCGCCACACTCAGCACCAGATCCAGGAGATGGAAGCGTTCTTTAAGGAGTGTCCGCACCCTGATGACAAGCAAAGGAAGGAGCTGAGTCGAGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACTCAGATGAAGACCCAACATGAACGTCATGAGAACACACAGCTGAGAACTGAAAACGAGAAGCTTCGAGCAGATAACATGAGGTTCAGGGAAGCTCTCGGCAATGCCTCGTGTCCTAACTGTGGTGGACCAACCGCTATAGGGGAAATGTCATTCGATGAACATCACTTGAGGCTCGAAAATGCTCGCCTGAGAGAAGAGATTGATAGGATATCTGCCATTGCTGCAAAGTATGTTGGGAAGCCTGTGGTGAGCTATCCACTTGTTTCTCCTTCATCTGTTCCTCCTCGTCCACTAGAACTTGGGGTTAGTGGTGGTTTTGGTGGCCAACCTGGAGGCATTGGTGGGGACATGTATGGTGGAGCTGCAGGAGATCTTCTAAGGTCAATAAGTGGACCTACTGAAGCTGATAAGCCAATCATAATAGAGCTTGCTGTTGCAGCCATGGAGGAGCTCATTGGAATGGCGCAAATGGGTGAGCCTCTTTGGTTGACTACCCTGGATGGCACCACTGTGCTCAACGAGGATGAGTACATCAGGTCTTTTCCTCGAGGGATTGGTCCTAAACCCGTTGGTTTCAAGTGTGAAGCTTCGAGGGAAACTGCTGTTGTTATCATGAACCATGTTAACCTTGTTGAGATCCTCATGGACGTGAATCAATGGTCCACGGTGTTCTCTGGCATTGTCTCAAGAGCAATGACTTTGGAAGTGCTATCAACAGGGGTGGCGGGGAATTACAACGGTGCATTGCAAGTGATGACAGCAGAAGTGCAAGTACCTTCGCCTCTGGTGCCAACTCGAGAGAGCTATTTTGTAAGGTATTGTAAGCAGCACGGTGACGGGACTTGGGCAGTAGTGGACGTGTCCTTGGATAATTTGCGTCCTAGTCCTTCAGCCAGATGTAGAAGAAGGCCCTCAGGTTGCTTAATTCAAGAAATGCCCAATGGCTACTCTAAGGTCATATGGGTTGAGCACGTAGAAGTGGATGACAGAGGTGTCCATAATCTATACAAGCAGCTTGTTAGCTCCGGGCATGCATTTGGTGCAAAACGTTGGATTGCAAACTTGGATCGACAATGTGAAAGGCTTGCTAGTGCCATGGCAACAAACATTCCCACAGTAGATGTTGGAGTAATAACAAACCCAGATGGGAGGAAGAGCATGTTGAAACTGGCTGAGAGAATGGTCATAAGCTTTTGTGCTGGAGTGAGTGCATCTACTGCACACACATGGACAACACTTTCTGGAACTGGTGCCGATGATGTAAGGGTCATGACACGTAAGAGTGTAGATGACCCAGGAAGGCCTCCTGGCATCGTTCTCAGTGCTGCAACTTCTTTTTGGCTTCCTGTGTCACCAAAAAGGGTTTTTGAATTCCTCCGCGATGAGAACTCCAGAAGTGAGTGGGATATTCTTTCCAACGGTGGAGTTGTTCAAGAAATGGCACACATTGCCAATGGCCGAGACACTGGAAATTGTGTCTCTCTACTTCGGGTGAATAGTGCGAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGTTGCGCGGACTCAACGGGATCTTTTGTGATATATGCTCCTGTAGATATTGTGGCAATGAACGTGGTTCTGAATGGAGGGGACCCGGACTACGTGGCCCTTCTCCCTTCAGGATTTGCTATACTCCCAGATGGGACCACTGCACATGGAGGTGGCATTGGTGACATTGGACATGGTGGTTCTCTCTTGACTGTGGCATTTCAAATATTGGTTGATTCGGTTCCAACGGCAAAGCTTTCTCTTGGATCAGTTGCTACTGTTAACAATCTCATTGCCTGCACTGTTGAGAGAATTAAGGCTGCTTTATCTGGTGAAGTTGCTTGA 2295 0.4819 MPAGIMIPARNMPSMIGRNGTVGGFGLSSGLSLGHPNLMEAGQLHPLDMPQNTSESDVPRIREDDFDSATKSGSENLEGASGEDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRFREALGNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVSYPLVSPSSVPPRPLELGVSGGFGGQPGGIGGDMYGGAAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTTVLNEDEYIRSFPRGIGPKPVGFKCEASRETAVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAEVQVPSPLVPTRESYFVRYCKQHGDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIANLDRQCERLASAMATNIPTVDVGVITNPDGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKRVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCADSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTAHGGGIGDIGHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKAALSGEVA* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1642 764 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 46 761 - -
Gso12g1642 764 CDD START_ArGLABRA2_like 281 504 - -
Gso12g1642 764 SMART HOX_1 90 153 IPR001356 GO:0003677
Gso12g1642 764 MobiDBLite consensus disorder prediction 57 71 - -
Gso12g1642 764 ProSiteProfiles START domain profile. 277 508 IPR002913 GO:0008289
Gso12g1642 764 SUPERFAMILY Homeodomain-like 82 149 IPR009057 -
Gso12g1642 764 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Gso12g1642 764 Coils Coil 155 175 - -
Gso12g1642 764 Pfam Homeodomain 92 147 IPR001356 GO:0003677
Gso12g1642 764 SUPERFAMILY Bet v1-like 277 507 - -
Gso12g1642 764 Gene3D - 79 166 - -
Gso12g1642 764 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 46 761 IPR042160 -
Gso12g1642 764 SMART START_1 286 505 IPR002913 GO:0008289
Gso12g1642 764 SUPERFAMILY Bet v1-like 524 756 - -
Gso12g1642 764 Gene3D - 334 505 IPR023393 -
Gso12g1642 764 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Gso12g1642 764 Pfam START domain 287 505 IPR002913 GO:0008289
Gso12g1642 764 MobiDBLite consensus disorder prediction 37 100 - -
Gso12g1642 764 CDD homeodomain 92 150 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1642 Gso-Chr12 40003738 40010981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1642 61 764 Homeobox Transcription Factor Family AT1G05230 81.445 0.0 1163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso12g1642 START 1.7e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1642 K09338 - gmx:100797992 1433.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1642 12 40003738 40010981 Gso11g3225 11 48001690 48008845 GST
Gso12g1642 12 40003738 40010981 Gso12g0822 12 8727081 8734901 PCT
Gso12g1642 12 40003738 40010981 Gso6g2495 6 46724713 46733005 PCT
Gso12g0822 12 8727081 8734901 Gso12g1642 12 40003738 40010981 PCT
Gso6g2495 6 46724713 46733005 Gso12g1642 12 40003738 40010981 PCT