Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1639 ATGAAGAAATTTATGTTTTTGCAACTTGTCACATGGATTTGGATATGTGGTGTTGCTCACAGCAGAAGGCCTGGCAGTGTGAACATTGGTGCGGTTTTTGCTTTCGACACTGTCATAGGTAGAGCTGCGAAGACGGCTATGGAAATGGCCATTTCTGATGTCAATGAGGACCCCACAGTTCTCAAGGGAACCAAACTCAACTTGATTATGAAGGATGCCATGTGCAATGCCTTTCTGGGATCAATTGGAGCTTTTCAGGTACTTGAGAAAGGGGTTGCAGCCATAATTGGTCCACAGTCATCTGCCGTAGCTCACACGGTTTCTCAAATTGCTGATGCTCTCCAAGTTCCTCTTGTTTCATATGCTGCCACCGATCCAACCCTGTCCTCCCTCCAGTTTCCATTCTTCATTCGAACTACACAAAGTGACTTGGCACAAATGACTGCAATGGCTGATCTAATTGACTTTCATGGATGGAAAGAGGTCATTGTTGTATTCTTGGATGATGATTATGGAAGAAATGGAGTATCTGCTTTGAGAGATGAGCTTGAAAAAAGGAGATTGAGAATTTCTTATAAATTGCCTTTAAGTATTAAGTTTGATTTGGATGAATTCACTAACTTGCTCAATCAATCCAAAGTGTTTGGTCCTCGTGTGTATGTTGTTCATGTCAACCCTGATCCGAGATTGAGAATTTTTTCCATTGCCCATAATCTTCAAATGATGGCCAAGGATTATGTCTGGCTTGTCACGGATTGGCTCTCAGCTACACTAGATTCATTATCTCCTGTGAATCAGACCTCTTTCAGTGTTCTCCATGGGGTTGTTGGTCTTCGTCAACACATTCCAGATTCCAGCAAAAAGAAAGCTTTTGTTTCTCGATGGATAGAAATGCAAAAAGAAGGATTAGCAAATACTAGTTTGAACTCTTATGGAATTTATGCTTATGACACAGTTTGGGCAGTTGCACGTGCAATTGATATATTCATCAAAGTACACAATACTATTACCTTCTCGTTTCCTGATAACTATAACTTATCTCATATGGTAGGAATTGGTATTCAGCTTGACAAGCTCAAAATCTTTGCTGGTGGATCTGATCTTGTCGACATATTATTACAATCAAATTTTACTGGTGTGAGTGGCCAACTTCATTTTAATTCTGACAGAAGTATTGTAAGTGGTGGTTATGATATTATAAATGTCAATCAGATGGGAATTAAAGGTGTTGGTTTTTGGTCTAATAATTCAGGATTTTCAGTTGTACCCCATACAGCTCTTAAAAAACGGAAATATAACAGGTTTTCCCAAGATCAGAAGCTTGGAAATATTACTTGGCCCGGTGGAATTACCGATCGACCTCGTGGCTGGGTGATTGCTGATAATACCAAGCCACTGAGAATTGGAGTGCCAAAAAGAGCAAGTTTTGTTGAATTCGTAACTGAACTGCCAGATAGTCATCAAATTCAGGGGTACTGCATCGATGTCTTCAAGAAAGCCCTAGAATTTATCCCATATGAAGTTCCTTTTGTATTCAAGCCTTTTGGGAACGGTAAAGCAAATCCCAATTATGATGCACTTGTGAAAATGGTTGATGAAAATGTATATGATGCAGTTGTTGGAGACATTGCAATTGTGACAAATCGTACAATGATTGTGGATTTTTCTCAGCCTTTTGCATCCTCTAGCCTTGTCATAGTGGCTCCTATCAACAAAGCAAGATCAAATGCTTGGGTGTTCCTCCAACCATTTACGGCAGATATGTGGTGTGCCACTGCTGCATCATTTTTGGTGGTTGGAGTTGTTATATGGATTCTTGAGCACCGAGTCAATAATGACTTCCGTGGTCCTCCTAAGAAGCAAATTGTGACAATGTTAATGTTCAGCCTCTCAACATTGTTTAAGAAAAATCAGGAAGACACCGTAAGCTCACTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTATTGATGGTGATCACGGCTAGCTATACAGCGAGCTTGACTTCAATTCTTACAGTGGAGCAGCTTTCATCGCCCATCACTGGAATTGATAGCTTGATTGCAAGTAACTGGCCTATCGGATACCAAGTAGGATCATTTGCTTACAACTATCTGACAGATAATCTTTATGTATCAAAATCAAGACTTATTCCCCTAGGCTCCCCCGAGGAATATGCTACAGCACTTCAGAAGGGGCCATCTGGTGGAGGGGTGGCAGCTATCATTGATGAGCTTCCATATGTTGAGTTATTTCTGTCAAATGAAACTGATTTTGGTATTATTGGACAGCCATTCGCCAGAAGCAGTTGGGGATTTGCTTTTCAGAGAGAGTCTCCTCTTGCCTATGACATGTCTACAGCAATTTTGAAACTCTCTGAGAATGGAGATCTCCGTAAGATACATGAGAAGTGGTTCTGTAAAATGGGTTGTGCTGAAGATAGGACAAGCAACTCCAAGCCTGACCAGCTTCACTTGATTAGCTTTTGGGGTCTGTATCTCTCATGCGGTATTGTCTTGCTTGTTGCACTTGCACTGTTTCTGCTGCTAATGATTCGCCAATATGCCCGCTTCAAACAAAGACAAAAAGATGTTGCTTCTTCATCCACAGAACCATCGGGCATTCATTGTTCCCAGGTTGTTGTTAACTTCTTTAACTTCATTGATGAGAAGGAAGAGGCCATCAAGAAAATGTTCACTCAATGTGACAATCATCACAACCCCAACTGA 2730 0.4081 MKKFMFLQLVTWIWICGVAHSRRPGSVNIGAVFAFDTVIGRAAKTAMEMAISDVNEDPTVLKGTKLNLIMKDAMCNAFLGSIGAFQVLEKGVAAIIGPQSSAVAHTVSQIADALQVPLVSYAATDPTLSSLQFPFFIRTTQSDLAQMTAMADLIDFHGWKEVIVVFLDDDYGRNGVSALRDELEKRRLRISYKLPLSIKFDLDEFTNLLNQSKVFGPRVYVVHVNPDPRLRIFSIAHNLQMMAKDYVWLVTDWLSATLDSLSPVNQTSFSVLHGVVGLRQHIPDSSKKKAFVSRWIEMQKEGLANTSLNSYGIYAYDTVWAVARAIDIFIKVHNTITFSFPDNYNLSHMVGIGIQLDKLKIFAGGSDLVDILLQSNFTGVSGQLHFNSDRSIVSGGYDIINVNQMGIKGVGFWSNNSGFSVVPHTALKKRKYNRFSQDQKLGNITWPGGITDRPRGWVIADNTKPLRIGVPKRASFVEFVTELPDSHQIQGYCIDVFKKALEFIPYEVPFVFKPFGNGKANPNYDALVKMVDENVYDAVVGDIAIVTNRTMIVDFSQPFASSSLVIVAPINKARSNAWVFLQPFTADMWCATAASFLVVGVVIWILEHRVNNDFRGPPKKQIVTMLMFSLSTLFKKNQEDTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLSSPITGIDSLIASNWPIGYQVGSFAYNYLTDNLYVSKSRLIPLGSPEEYATALQKGPSGGGVAAIIDELPYVELFLSNETDFGIIGQPFARSSWGFAFQRESPLAYDMSTAILKLSENGDLRKIHEKWFCKMGCAEDRTSNSKPDQLHLISFWGLYLSCGIVLLVALALFLLLMIRQYARFKQRQKDVASSSTEPSGIHCSQVVVNFFNFIDEKEEAIKKMFTQCDNHHNPN* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1639 909 CDD PBP1_GABAb_receptor_plant 28 423 IPR044440 -
Gso12g1639 909 Gene3D - 738 771 - -
Gso12g1639 909 PIRSF IGluLR_plant 1 909 IPR017103 -
Gso12g1639 909 SUPERFAMILY Periplasmic binding protein-like I 22 457 IPR028082 -
Gso12g1639 909 Gene3D - 45 394 - -
Gso12g1639 909 PANTHER GLUTAMATE RECEPTOR 3.7 10 907 - -
Gso12g1639 909 CDD GluR_Plant 464 806 - -
Gso12g1639 909 Gene3D - 772 806 - -
Gso12g1639 909 Gene3D - 458 576 - -
Gso12g1639 909 Gene3D - 577 706 - -
Gso12g1639 909 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 907 - -
Gso12g1639 909 Gene3D - 142 419 - -
Gso12g1639 909 Pfam Bacterial extracellular solute-binding proteins, family 3 467 806 IPR001638 -
Gso12g1639 909 SUPERFAMILY Periplasmic binding protein-like II 444 806 - -
Gso12g1639 909 Pfam Ligand-gated ion channel 807 838 IPR001320 GO:0015276|GO:0016020
Gso12g1639 909 Pfam Receptor family ligand binding region 44 403 IPR001828 -
Gso12g1639 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 40 56 - -
Gso12g1639 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 100 128 - -
Gso12g1639 909 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 315 327 - -
Gso12g1639 909 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1639 Gso-Chr12 39977902 39983836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1639 22 907 Ion Channels AT2G32400 57.399 0.0 1040
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1639 K05387 - gmx:100796389 1810.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1639 12 39977902 39983836 Gso11g3228 11 48025864 48031659 GST
Gso12g0817 12 8678900 8685041 Gso12g1639 12 39977902 39983836 PCT
Gso6g2507 6 46795030 46801322 Gso12g1639 12 39977902 39983836 PCT