Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1631 ATGTGTCCAATGGCCAGAACAGTCTCCAACAGCAATGAAACAGCAGCTAAAGAGGAGGGTGAGGTGAGAAATGGCGTAAGGAAGGGGCCATGGACCCCAGAAGAAGACGCGATCCTGATGGACTACGTGAAGAAGCACGGCGAAGGGAATTGGAACTCTGTGCAGAAGAATTCTGGCTTGTTAAGGTGTGGCAAAAGTTGCAGACTCAGATGGGCCAACCATCTCAGACCTAATCTCAAGAAAGGTGCATTCTCTCAAGAAGAAGAACAAGTCATCATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCACGAATGGCAGCACAGTTACCTGGTAGGACCGACAATGAAATAAAGAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCCCTTTATCCTCCTGAAGTCCATGCAGAAGCCACTTCATACCTTCTACAACACCACCGTTACTTGGAACAACAACAACAACAACAACCTCATTCATCTTCATCATTTTCTCTTCTCCTATCTTCATGTTACCCCAATAAACTCAATGATCCAAACCAAACCCATCATCATTCCAATGCAAATCTTCTGCAAAGCCAACCTGATCATTCTGCCAACCGTTACATCAATCCAAGCCAGCAATTCAAGTTTTCCAATGAAAACAGTGGAAGCAATGGAAATTTTGCTTTTCCATTGTCCCCTCTTTCTCCATATGGATCCTCCTCCTCCACCCTTCTTAACCACAGTTTAGGTGGTGGTGATCATGGCTTCATAGCAGGATCTCCCTATGAACCCTTTTCTTTGGTGCAAGGCTCCACCACTGACATCTCTTCCAACCAGACACCAACCCCTGCTTCATCCTATGCTAGTGGTGTCGATGGCTTGATGGGAGCTTCAAGCATGGTTAATAACAACAATAACAATAATGATTACTATGAAGTTGCACCATTGTCTCCTCCTCAAGGAAACAGTGGCCTGTTGGATGCTCTAGTGATGGAGGCTCAGGGACTTTCTCACAATGAGAAGTCAAAGAGTGAGGAGGACCCAAACTTAGCTGGGAAGTTATCTTGTAAGAGAAAGAAAATGGAATATGCTGAGGAGGGAGGCACTGTGCCAGCCATGAAGAAGAACAGTGGCAACAGTACTACTAATGAAAGCCAGAGGGATGATGATATTAGCTCCTCTCAATTGGCAAAAGGGAAGGAACAAATTGGCGAGGACCCGTTGGAAGAGATGAATGGGATGGACGATGACCTGGTTAGCCTGCTCAACCATTTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGTAGAGGGGAAAATCAGTCATTGGGACTTGAAAATCAGCCCAAAGCTTCACTACCAGATCCTGCTGATCAAGAAGATGCTTGGACTCTCGGAACTTGCTGGAACAACATGCCTCGCATATGCTAA 1434 0.4582 MCPMARTVSNSNETAAKEEGEVRNGVRKGPWTPEEDAILMDYVKKHGEGNWNSVQKNSGLLRCGKSCRLRWANHLRPNLKKGAFSQEEEQVIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPLYPPEVHAEATSYLLQHHRYLEQQQQQQPHSSSSFSLLLSSCYPNKLNDPNQTHHHSNANLLQSQPDHSANRYINPSQQFKFSNENSGSNGNFAFPLSPLSPYGSSSSTLLNHSLGGGDHGFIAGSPYEPFSLVQGSTTDISSNQTPTPASSYASGVDGLMGASSMVNNNNNNNDYYEVAPLSPPQGNSGLLDALVMEAQGLSHNEKSKSEEDPNLAGKLSCKRKKMEYAEEGGTVPAMKKNSGNSTTNESQRDDDISSSQLAKGKEQIGEDPLEEMNGMDDDLVSLLNHFPLEMPMPEWYRRGENQSLGLENQPKASLPDPADQEDAWTLGTCWNNMPRIC* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1631 477 MobiDBLite consensus disorder prediction 374 400 - -
Gso12g1631 477 MobiDBLite consensus disorder prediction 1 15 - -
Gso12g1631 477 Gene3D - 83 169 - -
Gso12g1631 477 SMART sant 27 77 IPR001005 -
Gso12g1631 477 SMART sant 80 128 IPR001005 -
Gso12g1631 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 130 IPR017930 -
Gso12g1631 477 PANTHER MYB DNA-BINDING DOMAIN PROTEIN 4 452 - -
Gso12g1631 477 MobiDBLite consensus disorder prediction 181 206 - -
Gso12g1631 477 ProSiteProfiles Myb-like domain profile. 76 126 IPR001005 -
Gso12g1631 477 SUPERFAMILY Homeodomain-like 25 122 IPR009057 -
Gso12g1631 477 CDD SANT 83 124 IPR001005 -
Gso12g1631 477 Pfam Myb-like DNA-binding domain 81 124 IPR001005 -
Gso12g1631 477 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Gso12g1631 477 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Gso12g1631 477 CDD SANT 30 75 IPR001005 -
Gso12g1631 477 Gene3D - 28 80 - -
Gso12g1631 477 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 452 - -
Gso12g1631 477 MobiDBLite consensus disorder prediction 363 413 - -
Gso12g1631 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Gso12g1631 477 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1631 Gso-Chr12 39881716 39885704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1631 22 477 MYB Transcription Factor Family AT2G32460 35.985 1.93e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso12g1631 Myb_DNA-binding 5.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1631 K09422 - gmx:100798860 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1631 12 39881716 39885704 Gso11g3234 11 48095329 48099345 GST