Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1627 ATGGAGCTTCGTTCTCGTCGACGCCTCTCCAATCCTTCAGTTTCCGGAAAGGAGCAACAGCCTGGCGATGATGCTGTTGGGGGAGACGAAACAACTACTGGCAAGGGAAGTAACAATAAAGATAAAGGTGTTGCTGTTACATCTTCAGATTCAGATATAGTTTCTGGTCCTGATTCTGATTATGATTTCGAAGATGAAGAGTTTGGTCGGGGCTCTTTACCTGACTTGAATCAAGATCCTTTTTCAAGCATTAGTGTTTCTAGTGGAGAAGATTATGCTTCTGATTCATCTGATGGTGGCAAGACTTCGTCCAAAAGGGGAAAGACACTGCTGTCCAGAGGGAAAAGAAAAAGTTTCAACACAGAATATGGGGATCCGAGTGATGTGGTTAGAGTGGCGGAGTACAAAGAAGATGATGCTCAATTTGCAATGTTTCAGCAACTATCAGTTCCCTCTGTTTCTAAGGGTAATAAGAAGAGGAAATATTCAAGAAAAGGAAGAAAAGGAGATTCAAAGCCAGTATTGTTGTGGAATGCATGGGAAGAGGAGCAAGAGAAATGGATTGATCGGCATATGTTAGAAGATGTTGACTCAGATCATCAGAGTGAGGTAATGAATGAAACTGCTGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATATCAAAAAGAATGGTTAGCCTGGGGTTTGAAACAGGAAAGTTCTGCGAGTAAAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTGTTCAAGCAATTGCTCTTGTCCTTGCCAAACGTGAATTCGAACAAAGTTGTGAACCAGATCAATCCATACCATGTTCTTCCAGCCTGAAGCCTGCGATCAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGTGAGATTGATCGCTTTACTTTAAAAGGAAACACCAAGGTGCTGATTTATCATGGGGCAAATAGAGGGAGGAGTGGGAATCGGTTTGCAGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGAGTGAGTACAGGAAGCATATGTTGCCTCCAAAAGAGAGATGCCCATATTGTGGAAAATTATATTTGCCGAATAAGTTGATATATCATCAGAACTATTATTGTGGTCCTGATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAAAAGAAAAGAGAAGTTACCCAAGGGAAGACCAAGAAATGTGACAGTAAGAAGATGTCAAGGAGTTCTAACAAGAAAAAGGAAGAGGAATTGTGGATGGATGAAGAAGATTTAGATGCACCTGTGTGTAGCGATAGGTCAATTCTTCATGCTGTGAAATGGCAGCGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGTAACACTGCTAAAGCAGTTCTTGCTTTGGAGTCTACCTACAAATGGGCATTAAGTGGCACTCCCCTTCAGAACCGAGTTGGGGAACTGTATTCTCTGATACGGTTCCTGCAAATAACTCCTTATTCCTATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCATAGCACTAAAGAATGTTCAGTCTGCTCCCACAGTTCTGTGCGGCATTTCTGTTGGTGGAATAAATATGTTGCCGGTCCAATTCAATCTTATGGAAATGGTGATGCTGGGAAAAGAGCTATGATATTGCTTAAACACAAAGTTTTGAAGAACATTGTATTAAGGCGCACTAAAATAGGCCGGGCCGCCGATCTTGCACTTCCACCAAGAATTGTTTCATTGAGAAGGGATTGCTTGGATATTAAAGAGCAAGATTATTATGAATCATTATACAATGAAAGTCAGGCACAATTTAATACATATATTGAAGCAAATACTCTGATGAATAATTATGCACATATATTTGACCTCCTCACACGATTGCGTCAGGCAGTTGATCATCCATACCTTGTGGTATACTCTCAAAGTGCAGCATCAAGAAGTGGAGTTATGACAAATAATGGCACTGTTGAACAAGTTTGTGGCATTTGCCATGAGCCAGTTGAAGATGTTGTGGTTACCACCTGTGAGCATGCATTTTGCAAGGCATGCTTGATAGACTTCTCTGCTTCCTTGGGACGAGTTTCATGCCCCACATGCTCTAATTTACTTACTGTTGATTTAACATTCAACAAGGATGTTGGGGATCAGGCTAATAAAACAACAATTAAGGGTTTCAGATCTTCAAGCATTTTGAATAGAATTTGCCTTGAGAACTTTCAGACAAGCACTAAAATAGAAGCTTTGAGGGAAGAAATAAGATTCATGGTTGAAAGGGACGGCTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAACTACTCTTTGCACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGGCTGCTCGGGATGCTGCCATTAAGAGATTCACTGAAGATCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACAGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCTGCTGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAGCCTATAAGAATTGTGAGGTTTGTCATCGAGAACACAATCGAGGAGAGAATTCTGAAACTGCAAGAGAAGAAGGAACTAGTGTTTGAAGGGACTATAGGTGGCTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTATTTGTTACCTAA 2781 0.4121 MELRSRRRLSNPSVSGKEQQPGDDAVGGDETTTGKGSNNKDKGVAVTSSDSDIVSGPDSDYDFEDEEFGRGSLPDLNQDPFSSISVSSGEDYASDSSDGGKTSSKRGKTLLSRGKRKSFNTEYGDPSDVVRVAEYKEDDAQFAMFQQLSVPSVSKGNKKRKYSRKGRKGDSKPVLLWNAWEEEQEKWIDRHMLEDVDSDHQSEVMNETAEAPSDLTMPLLRYQKEWLAWGLKQESSASKGGILADEMGMGKTVQAIALVLAKREFEQSCEPDQSIPCSSSLKPAIKGTLVICPVVAVTQWVSEIDRFTLKGNTKVLIYHGANRGRSGNRFADYDFVITTYSVVESEYRKHMLPPKERCPYCGKLYLPNKLIYHQNYYCGPDAVRTEKQSKQAKKKKREVTQGKTKKCDSKKMSRSSNKKKEEELWMDEEDLDAPVCSDRSILHAVKWQRIILDEAHYIKSRHCNTAKAVLALESTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSTKECSVCSHSSVRHFCWWNKYVAGPIQSYGNGDAGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRRDCLDIKEQDYYESLYNESQAQFNTYIEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQSAASRSGVMTNNGTVEQVCGICHEPVEDVVVTTCEHAFCKACLIDFSASLGRVSCPTCSNLLTVDLTFNKDVGDQANKTTIKGFRSSSILNRICLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLAARDAAIKRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1627 926 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 502 IPR014001 -
Gso12g1627 926 MobiDBLite consensus disorder prediction 1 126 - -
Gso12g1627 926 MobiDBLite consensus disorder prediction 76 107 - -
Gso12g1627 926 SMART helicmild6 787 870 IPR001650 -
Gso12g1627 926 Pfam Helicase conserved C-terminal domain 756 870 IPR001650 -
Gso12g1627 926 Gene3D - 378 593 IPR038718 -
Gso12g1627 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 574 IPR027417 -
Gso12g1627 926 Pfam SNF2-related domain 234 649 IPR000330 GO:0005524|GO:0140658
Gso12g1627 926 SMART ultradead3 215 507 IPR014001 -
Gso12g1627 926 MobiDBLite consensus disorder prediction 31 55 - -
Gso12g1627 926 SUPERFAMILY RING/U-box 667 718 - -
Gso12g1627 926 MobiDBLite consensus disorder prediction 387 421 - -
Gso12g1627 926 PANTHER BNAA08G28190D PROTEIN 159 923 - -
Gso12g1627 926 ProSiteProfiles Zinc finger RING-type profile. 672 712 IPR001841 -
Gso12g1627 926 Pfam Zinc finger, C3HC4 type (RING finger) 672 711 IPR018957 GO:0046872
Gso12g1627 926 ProSitePatterns Zinc finger RING-type signature. 687 696 IPR017907 -
Gso12g1627 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 924 IPR027417 -
Gso12g1627 926 CDD DEXDc_SHPRH-like 219 517 - -
Gso12g1627 926 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 732 IPR013083 -
Gso12g1627 926 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 752 916 IPR001650 -
Gso12g1627 926 Gene3D - 596 924 IPR027417 -
Gso12g1627 926 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 159 923 - -
Gso12g1627 926 Gene3D - 221 357 IPR038718 -
Gso12g1627 926 CDD SF2_C_SNF 754 881 - -
Gso12g1627 926 SMART ring_2 672 711 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1627 Gso-Chr12 39825022 39832501 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1627 148 926 RAD5 or RAD16-like Gene Family AT1G05120 66.923 0.0 1085
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso12g1627 SNF2_N 1.8e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1627 K15083 - gmx:100798333 1809.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1627 12 39825022 39832501 Gso11g3237 11 48145268 48152771 GST