Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1625 ATGGAGTGGACTAGAGGCTTCATCATAGGACGTGGGTCATCGGCCACCGTTTACACCGCCACCTCATCCCACTCCTCCACCGTGGCGGCCGTCAAGTCGGCGGAGCTAACACTATCAAATTCAGAGCAGCTGCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCTCACATAGTTACCTACAAAGGCTGCAACATAACAGAGGACAACAACACCCTTTGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGTACTCTCTCTCAGGAAATTCACCGGCACGGTGGCCGCCTCAGCGAACCGGCCACCGTTTACTACACGCGACAAGTCCTGCAGGGGCTACAGTACTTGCACAATAAGGGTGTTGTGCATTGCGATATTAAAGGTGGCAACATTTTGATTGGTGAAGATGGGGCCAAGATTGGGGACTTTGGATGTGCCAAGTTTGCGAATGATTCCTCGGCGGTGATCGGTGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAGGGGTACCCTGCTGATGTGTGGGCACTTGGGTGCACTGTGCTTGAAATGGCCACTGGTTTTGCACCATGGCCTAATGTGGAAGACCCTGTCACAGTGTTGTACCGTGTTGCATATTCCGATGATGTTCCAGAGATTCCTTGTTTTCTGTCTGAGGAAGCAAAGGATTTCTTGGGGAAGTGTTTCAGGAGGAATCCTAAGGAGAGGTGGAGTTGTGGTCAGCTTCTGAAGCATCCGCTTCTTGGGGAATTCAGTTCCAATGATAAGAAAATTCAGGAATCTAATTCGTGTTCTCCAACAAGTATTCTTGAGCAGGGCTTTTGGAATTCTATGGAAGAGGCAGAGGTAGAGTGTGTCTCTGCCTCTGCCAATGTGGTTCAGGTTAAAAGTTTTGAGGATTCTCCCAGAGGTAGGATCAGAAGGCTTGCTTCGTGTTCAGGGGATCCAATTGGGGAATTGGACGATGAAAATTGGATCACAGCAAGAGGCAGTGAAACGGGTGCTTCTTCAAGTTGTGATGGGTTGGATTTGGATGTTAATAGTAGAATTAGTGGTTATTTTTGTGATGATTATTATAAATGTAGGGATGTTAGTGTTGTAGTTGATAGTTTCAATTTTGAGAGAGGCAATTCTGAGAAGCTTCTCCCATTAACATTGGATTTTTTATAA 1191 0.4786 MEWTRGFIIGRGSSATVYTATSSHSSTVAAVKSAELTLSNSEQLQREQRILSSLFSPHIVTYKGCNITEDNNTLWFNLFMEYMPFGTLSQEIHRHGGRLSEPATVYYTRQVLQGLQYLHNKGVVHCDIKGGNILIGEDGAKIGDFGCAKFANDSSAVIGGTPMFMAPEVARGEEQGYPADVWALGCTVLEMATGFAPWPNVEDPVTVLYRVAYSDDVPEIPCFLSEEAKDFLGKCFRRNPKERWSCGQLLKHPLLGEFSSNDKKIQESNSCSPTSILEQGFWNSMEEAEVECVSASANVVQVKSFEDSPRGRIRRLASCSGDPIGELDDENWITARGSETGASSSCDGLDLDVNSRISGYFCDDYYKCRDVSVVVDSFNFERGNSEKLLPLTLDFL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1625 396 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 359 - -
Gso12g1625 396 Pfam Protein kinase domain 8 254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1625 396 ProSiteProfiles Protein kinase domain profile. 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1625 396 Coils Coil 393 396 - -
Gso12g1625 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Gso12g1625 396 SUPERFAMILY Protein kinase-like (PK-like) 4 262 IPR011009 -
Gso12g1625 396 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Gso12g1625 396 SMART serkin_6 3 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1625 396 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Gso12g1625 396 CDD STKc_MAPKKK 2 255 - -
Gso12g1625 396 PANTHER MAP KINASE KINASE KINASE 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1625 Gso-Chr12 39818115 39819421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1625 1 285 MAP Kinase Kinase Kinase AT2G32510 52.397 4.02e-103 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso12g1625 Pkinase 4e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1625 K20716 - gmx:100797801 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1625 12 39818115 39819421 Gso11g3238 11 48158073 48159315 GST
Gso12g1625 12 39818115 39819421 Gso12g0798 12 8350882 8352223 PCT
Gso12g1625 12 39818115 39819421 Gso6g2527 6 47001104 47002444 PCT
Gso12g0798 12 8350882 8352223 Gso12g1625 12 39818115 39819421 PCT
Gso6g2527 6 47001104 47002444 Gso12g1625 12 39818115 39819421 PCT