Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1608 ATGGAGGGTGCTGGGATGGAAGAGAATAATATTATTAATGATGATGATAATAATAACAAGTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATTCAGGACGCTTGTGATGATGCTTGCAGTATATGCCTTGAAGCTTTCTGTGATAGTGATCCTTCCACGGTGACGAGCTGCAAGCATGAGTTTCATCTTCAGTGCATTCTCGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAGCCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGAAACTTTAGGTTCAATCCATCTAGAAATGCCACAATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGACGCTGATCTTGAAGAGCGTATAATCCAACACTTAGCGGCTGCAGCAGCGATGGGAAGAGCACGCCACATTGCTAGAAGAGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCACATTTTTTGGTTTTTTCAACTAATCCTAATTCACCTCCCATGGCTCCTGCTTCTTCCTCTCCATCTCAGAGGGGGGATGATGAACCAATTCCTACAATTGCTGTTGCCAATCTGTCTCCAACTCCTGCAACTGGAGAAGAATCATCACAGCTGACTTTAGTTCCGCCTATTCAAGCAGAACAGGTGTCTGCTTCAGGATCTGGATCTACTGCTCTTGCTACAGATCATCAGGGATCATCTTACAACAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGCCAAGACAGAGCAGGGCCATCAGAATTACAATCATTTTCAGAATCTCTGAAATCTAAACTGAATGCTGTATCAACAAGATACAAGGAGTCAATTTCCAAGAGCACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGGAACAACACTATGTCTGACCTTGGATCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGCCTGGAGACCAGCGACAATAATAGAAGCAATAGCAATTCTGCCCCCAGTAATATAGAGGATGGTTCAGTTCAGGAATATAATGGTCAAACTTTAACACCAGGCAATGAAGGGGACGGTCTTTTGAGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGCTCTAGTTCGAACTAG 1206 0.4494 MEGAGMEENNIINDDDNNNKSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQPISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGASDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTNPNSPPMAPASSSPSQRGDDEPIPTIAVANLSPTPATGEESSQLTLVPPIQAEQVSASGSGSTALATDHQGSSYNNRRSPNQSSPSSQDRAGPSELQSFSESLKSKLNAVSTRYKESISKSTRGWKERWFSRNNTMSDLGSEVRREVNAGIATVSRMMERLETSDNNRSNSNSAPSNIEDGSVQEYNGQTLTPGNEGDGLLRDNNTKASCAAGSSSN* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1608 401 MobiDBLite consensus disorder prediction 344 401 - -
Gso12g1608 401 SUPERFAMILY RING/U-box 37 92 - -
Gso12g1608 401 MobiDBLite consensus disorder prediction 214 302 - -
Gso12g1608 401 MobiDBLite consensus disorder prediction 348 378 - -
Gso12g1608 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 119 IPR013083 -
Gso12g1608 401 MobiDBLite consensus disorder prediction 172 203 - -
Gso12g1608 401 Pfam Ring finger domain 43 84 IPR001841 -
Gso12g1608 401 MobiDBLite consensus disorder prediction 160 302 - -
Gso12g1608 401 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 5 401 - -
Gso12g1608 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 5 401 - -
Gso12g1608 401 SMART ring_2 44 84 IPR001841 -
Gso12g1608 401 ProSiteProfiles Zinc finger RING-type profile. 44 84 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1608 Gso-Chr12 39644556 39648517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1608 41 84 C3H Transcription Factor Family AT5G15790 50.000 6.20e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1608 K19043 - gmx:100780275 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1608 12 39644556 39648517 Gso11g3246 11 48242055 48245952 GST