Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1606 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACGGTTAGATGTGGACACTGTGCCAATTTGCTGACAGTTAACATGGGAGCATCACTTCAAACTTTTCCTTCTCAAGACACTACTCAGAGACAGCATCTAAGTGTTCAAGAAGCATGCAGCAAGGAACTAGGATCATCATCAAAGTGCAAATCATTTGAGACTGTAGACCATGAGCAGCAACCTAGGATTCCTCCCATTCGTCCTCCTGAGAAGAGACAACGTGTTCCTTCTGCTTATAACCGGTTCATTAAGGAAGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCATTTAGCACAGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTAGACGGCAATAAGCAAGCAAAGTTGGACCAGGGTGATGGTACTCAAAAGTCTAACGGATTTTACTGA 540 0.437 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLTVNMGASLQTFPSQDTTQRQHLSVQEACSKELGSSSKCKSFETVDHEQQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1606 179 Gene3D High mobility group box domain 93 152 IPR036910 -
Gso12g1606 179 PANTHER PROTEIN YABBY 6-RELATED 3 179 IPR006780 GO:0007275
Gso12g1606 179 PANTHER AXIAL REGULATOR YABBY 2-RELATED 3 179 - -
Gso12g1606 179 Pfam YABBY protein 7 156 IPR006780 GO:0007275
Gso12g1606 179 MobiDBLite consensus disorder prediction 86 111 - -
Gso12g1606 179 SUPERFAMILY HMG-box 101 149 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1606 Gso-Chr12 39597271 39607331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1606 1 179 C2C2-YABBY Transcription Factor Family AT1G08465 64.516 5.84e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Gso12g1606 YABBY 6.8e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1606 K25796 - gmx:100785458 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1606 12 39597271 39607331 Gso11g3248 11 48274487 48283635 GST
Gso12g1606 12 39597271 39607331 Gso12g0783 12 8128685 8136161 PCT
Gso12g0783 12 8128685 8136161 Gso12g1606 12 39597271 39607331 PCT