Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1603 ATGGATCCCTTCATCCACAAGCTCCGTCGCCACCTTCTCGCATGGTTCCACCGATCTCGCTCCGGTGCGGTGTTTTTTGTGCGGAGAATTTCGTATAAGGACGTTAGAAGAGCGACGGACGGTTTCCACAGAGTCCTTTACAGCAATTCCGAGGTTTCTGCGTACGCTGCCAAGTTCGGAGACGGCGGCGGCGCTTGTTTGGTGAGAGAAGTGAAAGGCTTCGATGAAGGAAACGACGATTTCTACAGACACGTGCAGTTCTTGGGGCGCTTGCGTCATCGCCACCTTCTCTCGCTCAGAGGCTTCTCCGTCGGACGCAATCACAAGAGATTGCTCATATTTGACAACATAGAAAATGGAAGCTTGAAGGATCATCTAAATGATCCTTTGAAGACTCCCTTGGATTGGAGGACAAGATTACAGATAGCTAATGGCGTTGTGGCTGCACTGGAATACTTGTTTCTCTTCAGTGACCCACCAGTATGTCATGTCTCTATCACCTCAAGCAATATCATGTTAGATGAGAACTTCACAGCCAAACTATCTGACTTTGGCCTTCTTACATCTGGTGGAAATTCTGTTATGGTGCCATATTCAGAAGATTTGAAGCAGAAAAGTTGTAAGATTATATTCCAACTTGGAGTGCTCATATTGGAACTGGTCACCGGTCAGTCATCAGAGATGGAAGGTTCGGATTTAATCGAATGGATCCAAGAATCCCGTTTTTACAATTCCATAGATAAGATGATAGATCCTGATCTTGGTAACAATTATGACTGTACGGAGCTCAAAAGTCTTCTAGCTGTGGCAAAATTATGTATCAAATCATGGGACAAGCCTTCATTTACAATTCCACAGTTATTTCGGCATCTCCAAAAGAAGATTGATATTAGCAATTACTAG 903 0.4452 MDPFIHKLRRHLLAWFHRSRSGAVFFVRRISYKDVRRATDGFHRVLYSNSEVSAYAAKFGDGGGACLVREVKGFDEGNDDFYRHVQFLGRLRHRHLLSLRGFSVGRNHKRLLIFDNIENGSLKDHLNDPLKTPLDWRTRLQIANGVVAALEYLFLFSDPPVCHVSITSSNIMLDENFTAKLSDFGLLTSGGNSVMVPYSEDLKQKSCKIIFQLGVLILELVTGQSSEMEGSDLIEWIQESRFYNSIDKMIDPDLGNNYDCTELKSLLAVAKLCIKSWDKPSFTIPQLFRHLQKKIDISNY* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1603 300 Gene3D Phosphorylase Kinase; domain 1 16 115 - -
Gso12g1603 300 ProSiteProfiles Protein kinase domain profile. 32 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1603 300 SUPERFAMILY Protein kinase-like (PK-like) 24 267 IPR011009 -
Gso12g1603 300 Pfam Protein tyrosine and serine/threonine kinase 78 189 IPR001245 GO:0004672|GO:0006468
Gso12g1603 300 PANTHER OS01G0253100 PROTEIN 1 296 IPR045271 GO:0004714|GO:0006468
Gso12g1603 300 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 296 - -
Gso12g1603 300 Gene3D Transferase(Phosphotransferase) domain 1 210 299 - -
Gso12g1603 300 Gene3D Transferase(Phosphotransferase) domain 1 117 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1603 Gso-Chr12 39564201 39567363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1603 22 296 Receptor kinase-like Gene Family AT3G19300 36.027 4.90e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Gso12g1603 PK_Tyr_Ser-Thr 9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1603 - - gmx:100791979 595.504