Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1602 ATGTTCGGAAGGGCACCGAAGAAAAGCGACAGCACCAGGTACTATGAAATCCTCGGCGTTTCGAAGAACGCTTCGCCGGATGATTTAAAGAAGGCTTACAAGAAAGCCGCCATTAAGAACCACCCTGACAAAGGCGGTGATCCTGAGAAGTTCAAAGAGCTTGCTCAAGCCTATGAGGTTCTGAGTGACCCTGAGAAGCGTGAAATTTATGACACATATGGAGAAGATGCTCTTAAGGAAGGAATGGGTGGTGGTGGCGGTGGCCATGATCCATTTGATATCTTCAGTTCATTCTTTGGTGGAAGTCCGTTTGGGTCAGGTGGTAGCAGTAGAGGACGGAGGCAGAGACGGGGAGAAGATGTGGTTCATCCCCTGAAGGTCTCTCTGGAGGATCTTTACCTTGGAACATCTAAGAAACTCTCTCTTTCACGAAACGTGCTGTGTTCAAAATGCAATGGGAAGGGCTCAAAGTCTGGGGCTTCAATGACCTGTGCTGGTTGCCAGGGTACTGGCATGAAGGTGTCTATTAGGCACCTTGGTCCTTCTATGATTCAGCAGATGCAGCATCCTTGCAATGAATGTAAGGGTACTGGAGAGACAATCAATGACAGAGACAGGTGCCAACAGTGCAAAGGAGAGAAAGTTGTTCAGGAGAAGAAAGTACTTGAAGTTGTTGTGGAGAAGGGAATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCTGATGAAGCACCTGATACAGTCACTGGGGATATTGTCTTTGTCCTACAACAGAAGGAACACCCAAAGTTCAAACGAAAGGCCGATGACCTTTTTGTAGAACACACATTGTCTCTTACTGAGGCACTGTGTGGCTTCCAGTTTGTGCTGGCTCACTTGGATGGCCGGCAGCTTCTTATCAAATCTAACCCTGGGGAGGTTGTTAAGCCTGATTCATACAAGGCAATAAATGATGAGGGAATGCCAAACTACCAGAGGCACTTCCTGAAGGGAAAGCTTTACATTCATTTCTCAGTGGAATTTCCTGATACCCTGAGTCTTGATCAGGTGAAGGCTTTGGAGGCTACTCTGCCACTAAAGCCTACATCGCAGTTGACAGACATGGAGCTGGATGAGTGTGAGGAGACCACACTCCATGATGTGAACATGGAGGAAGAGATAAGGAGGAGGCAACAAGCTCAGCAGGAGGCATATGAGGAGGATGAGGATATGCATGGTGGTGCTCAGAGAGTGCAGTGCGCTCAGCAGTAA 1254 0.4785 MFGRAPKKSDSTRYYEILGVSKNASPDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDTYGEDALKEGMGGGGGGHDPFDIFSSFFGGSPFGSGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVLCSKCNGKGSKSGASMTCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDRDRCQQCKGEKVVQEKKVLEVVVEKGMQNGQKITFPGEADEAPDTVTGDIVFVLQQKEHPKFKRKADDLFVEHTLSLTEALCGFQFVLAHLDGRQLLIKSNPGEVVKPDSYKAINDEGMPNYQRHFLKGKLYIHFSVEFPDTLSLDQVKALEATLPLKPTSQLTDMELDECEETTLHDVNMEEEIRRRQQAQQEAYEEDEDMHGGAQRVQCAQQ* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1602 417 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Gso12g1602 417 CDD DnaJ 14 63 IPR001623 -
Gso12g1602 417 Gene3D DnaJ domain 10 109 IPR036869 -
Gso12g1602 417 Gene3D - 262 344 - -
Gso12g1602 417 MobiDBLite consensus disorder prediction 389 417 - -
Gso12g1602 417 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 145 217 IPR036410 -
Gso12g1602 417 Hamap Chaperone protein DnaJ [dnaJ]. 10 391 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gso12g1602 417 MobiDBLite consensus disorder prediction 389 408 - -
Gso12g1602 417 Pfam DnaJ domain 14 71 IPR001623 -
Gso12g1602 417 CDD DnaJ_C 119 346 - -
Gso12g1602 417 Pfam DnaJ C terminal domain 122 343 IPR002939 -
Gso12g1602 417 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Gso12g1602 417 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 7 417 IPR044713 GO:0006457|GO:0030544
Gso12g1602 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 119 263 IPR008971 GO:0006457|GO:0051082
Gso12g1602 417 SUPERFAMILY Chaperone J-domain 8 108 IPR036869 -
Gso12g1602 417 Gene3D - 148 214 - -
Gso12g1602 417 Pfam DnaJ central domain 148 214 IPR001305 GO:0031072|GO:0051082
Gso12g1602 417 CDD DnaJ_zf 148 214 IPR001305 GO:0031072|GO:0051082
Gso12g1602 417 ProSiteProfiles Zinc finger CR-type profile. 135 219 IPR001305 GO:0031072|GO:0051082
Gso12g1602 417 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 7 417 - -
Gso12g1602 417 Gene3D - 110 260 - -
Gso12g1602 417 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gso12g1602 417 PRINTS DnaJ domain signature 46 66 IPR001623 -
Gso12g1602 417 PRINTS DnaJ domain signature 66 85 IPR001623 -
Gso12g1602 417 Coils Coil 384 404 - -
Gso12g1602 417 SUPERFAMILY HSP40/DnaJ peptide-binding domain 265 354 IPR008971 GO:0006457|GO:0051082
Gso12g1602 417 SMART dnaj_3 12 66 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1602 Gso-Chr12 39559566 39561841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1602 14 73 C2H2 Transcription Factor Family AT1G74250 44.928 3.50e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1602 K09503 - gmx:100778677 754.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1602 12 39559566 39561841 Gso11g3251 11 48308427 48310683 GST
Gso12g1602 12 39559566 39561841 Gso12g0780 12 8074948 8077746 PCT
Gso12g1602 12 39559566 39561841 Gso11g1318 11 14525023 14527783 PCT
Gso12g0780 12 8074948 8077746 Gso12g1602 12 39559566 39561841 PCT
Gso11g1318 11 14525023 14527783 Gso12g1602 12 39559566 39561841 PCT