Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1601 ATGGGTGTCTCTGGGAAGTGGATTAAAGCATTGGTTGGTCTAAAGAAATCAGAAAAGCCAGGGTCTTCTGAGAAGGATGGAAATGTTGGCAAGTTTCACCATCAGAGAAGGCATGGTGTTGAATTTGATAATGGTAAATTTCCGAACGAATTGGATAATGCTGCTACTCCACCTGTTGAATATGATAATGGCCATGCAAACCTTGATGCCCACTATTCATCTTCTTCTTCACAACAAGCACATGATGCTGCACATAATCAACAGATGAGGGAGGAATTGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCTAGAAGAGCACTACGGGCTTTGAAAGGTGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCCATGCAGTGAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAAGCTCGTGTTCGGGCTAGGCGTGTTTGCATGGCATTGGAAACTCAAGCATCACAACAGAAGCATCAGCAAAACCTTGCAAATGAAGCTCGAGTTCGAGAAACAGAAGAAGGATGGTGTGATAGTGTAGGATCTGTTGAAGAAATTCAGGCTAAAATATTGAAGAGACAAGAGGCTGCAGCAAAACGTGAGAGAGCCATGGCGTATGCTCTATCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCTGGTGGATTTGAACCAGATAAAAATAGCTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTCCGTCCTTGGGAGAACCGCTTCGTTGACATTAATATGAAGGATGGAGTAACAGTACATGAAGATGGAGCTAAGGATGATAAAAATGGAACCACACCTCAGTTGAGCTCTGCTAACAAGAAACCATTCTCATCAAACACACATCCAAACCTGACAAGTCAAGGAACTGGTCCCACTATATCTGATGGCTGTGATTCTTCATCTAGTAAGTCTGCAGGTTTGCTAGAATCATCATACACGCAGCCTGTTAAGCCAACTTCTAAGGCAAAAGTTGAAAATACTGTTGAAGAAGTTAACTCAAAACCTAGAATTGGGTCAAGATCCCATAGTAATCCAAAGGAGAGAACATCACAGGCAGATAAGCAGGCCAAAAAACGATTATCTCTGCCTAACAATGGGGGTGGAGCTGGATGTCAAATAGTCAAACACCCTGTTAGCACTACTAGTGTGATTAGGGATAAACCTAAGCTCAACGGAAGACGGGATGCGAATACAAAACCAGTTCCATAG 1266 0.44 MGVSGKWIKALVGLKKSEKPGSSEKDGNVGKFHHQRRHGVEFDNGKFPNELDNAATPPVEYDNGHANLDAHYSSSSSQQAHDAAHNQQMREELAAIRIQTAFRGFLARRALRALKGVVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVCMALETQASQQKHQQNLANEARVRETEEGWCDSVGSVEEIQAKILKRQEAAAKRERAMAYALSHQWQAGSRQQPVSSGGFEPDKNSWGWNWLERWMAVRPWENRFVDINMKDGVTVHEDGAKDDKNGTTPQLSSANKKPFSSNTHPNLTSQGTGPTISDGCDSSSSKSAGLLESSYTQPVKPTSKAKVENTVEEVNSKPRIGSRSHSNPKERTSQADKQAKKRLSLPNNGGGAGCQIVKHPVSTTSVIRDKPKLNGRRDANTKPVP* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1601 421 MobiDBLite consensus disorder prediction 68 84 - -
Gso12g1601 421 MobiDBLite consensus disorder prediction 281 340 - -
Gso12g1601 421 PANTHER IQ-DOMAIN 5-RELATED 2 387 - -
Gso12g1601 421 PANTHER IQ-DOMAIN 5-RELATED 2 387 - -
Gso12g1601 421 Gene3D - 90 142 - -
Gso12g1601 421 ProSiteProfiles IQ motif profile. 91 119 IPR000048 GO:0005515
Gso12g1601 421 MobiDBLite consensus disorder prediction 359 374 - -
Gso12g1601 421 MobiDBLite consensus disorder prediction 41 88 - -
Gso12g1601 421 SMART iq_5 113 134 IPR000048 GO:0005515
Gso12g1601 421 SMART iq_5 90 112 IPR000048 GO:0005515
Gso12g1601 421 MobiDBLite consensus disorder prediction 272 421 - -
Gso12g1601 421 Pfam IQ calmodulin-binding motif 94 112 IPR000048 GO:0005515
Gso12g1601 421 Pfam IQ calmodulin-binding motif 115 132 IPR000048 GO:0005515
Gso12g1601 421 ProSiteProfiles IQ motif profile. 115 142 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1601 Gso-Chr12 39546850 39554177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1601 1 420 IQD Protein Family AT3G22190 55.196 1.22e-125 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1601 - - gmx:100781346 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1601 12 39546850 39554177 Gso11g3252 11 48313960 48320447 GST