Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1597 ATGGATGTCGATTCCTCGATGGTGCCGGAGACCGATCACGATCCCGCCGTACAGAACCACGCCGCCGATGACCCGGCGCCGGACGCGGCGGAGGGAGAACAGCTAGGGGAGCCGCCGTCGTCCGGAGGCGGATCTCCGGAGCAGACGCAGCCGGCGCCTGCTTCGGCGCCGCAGAGTCCGGTGGTCGGACCGAGGCTGGCGCCTAGTTACACAGTGGTGAATGCAATTTTGGAGAAGAAGGAGGACGGACCGGGGCCGAGGTGCGGCCACACGCTAACGGCGGTGGCGGCGGTCGGAGAGGAGGGGACCCCAGGGTACATTGGTCCGAGGTTGATTTTGTTCGGCGGTGCCACTGCTCTTGAAGGCAATTCCGCGGCGACAGGGACTCCTTCATCTGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACAGCTGATGTCCATTGTTATGATGTCTTGACTAATAAATGGTCTAGGATAACTCCCTTTGGAGAACCTCCCACTCCTAGGGCTGCACATGTGGCGACTGCTGTAGGAACTATGGTGGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCAGCGGAGGACCTTCATGTTCTTGATCTCACTCAGCAATGGCCACGCTGGCATAGAGTGTCTGTTCAGGGCCCTGGACCCGGGCCACGCTATGGACATGTAATGGCTTTGGTGGGGCAGAGGTATCTAATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCCTGGACACAGCTGCTAAGCCTTATGAATGGCGCAAGCTAGAGCCAGAAGGAGAGGGCCCACCTCCATGCATGTATGCAACTGCAAGTGCACGCTCTGATGGACTTCTTCTGCTTTGTGGAGGCAGGGATGCCAATAGTGTTCCATTGTCAAGTGCATATGGACTTGCTAAACATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCAGGTGTCTCACCATCACCAAGATATCAGCATGCAGCGGTATTTGTTAATGCAAGGCTCCATGTGTCTGGTGGGGCTCTTGGTGGAGGACGGATGGTTGAAGACTCATCAAGTGTGGCAGTATTGGACACTGCTGCTGGTGTTTGGTGTGATACAAAATCTGTTGTTACGAGTTCAAGAACTGGTAGATACAGTGCTGATGCAGCAGGAGGAGATGCTGCAGTTGAGTTGACTCGGCGTTGTAGGCACGCAGCAGCTGCTGTTGGTGACCTAATTTTTATTTATGGTGGTTTACGTGGGGGAGTCTTGCTAGATGACCTACTTGTTGCTGAAGATCTTGCTGCTGCTGAGACAACAGCTGCTGCTTCACATGCTGCTGCTGCTGCAGCTGCATCTGCATCTAATGTACAAGCAGGACGCTTACCTGGACGATATGGATTTGCTGATGATAGAACGAGGGAAACGATGCCTGAGGCAGCTGCTGATGGTTCTGTTGTTTTAGGAAATCCAGTTGCGCCACCAATGAATGGTGACATTTATACTGATATCAGCACTGAAAATGCCATGCTTCAGGGACCTCGGCGAACTGCTAAAGGTGTGGAGTATCTGGTTGAAGCATCAGCTGCAGAAGCTGAAGCTATCAGTGCAGCACTGGCTGCTGCCAAGGCACGGCAGGAGAACGGAGAAGTTGAATTGCCTGACAGAGACCGTGGGGCGGAGGCTACCCCAAGTGGGAAACAAACATCTTCCTTGATTAAGCCTGACTCTGCAGGTTCAAATAACATTACTCCTGGGGGAGTTCGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGAGCATTAGGAGGCATGGTTAGACAGCTTTCAATAGATCAATTTGAAAATGAAGGCAGGCGGGTTGGTTACGGGACTCCAGAAAATGCAACTGCTGCCAGGAAATTATTAGATCGGCAGATGTCTATCAATAGTGTGCCAAAAAAGGTCATTGCACACCTCTTAAAGCCTCGTGGATGGAAACCACCAGTACGCCGGCAGTTTTTCTTAGATTGTAATGAAATTGCTGATCTTTGTGATAGTGCTGAGCAGATATTTTCGAGTGAACCAAGTGTCTTGCAACTAAGGGCTCCAATTAAAATATTTGGTGATCTACATGGACAGTTTGGTGATCTCATGCGCCTTTTTGATGAGTATGGTGCACCATCAACTGCTGGTGACATTGCATATATCGATTATCTATTCCTAGGAGATTATGTTGATCGGGGACAACACAGTTTGGAAACTATAACCCTTCTTCTTGCTCTGAAGGTTGAGTATCCCAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATTAATGCACTGTTTGGTTTCCGAATTGAGTGCATAGAGAGGATGGGTGAGAGAGATGGAATTTGGACATGGCATCGGATAAACAAGCTGTTTAATTGGCTTCCTCTGGCAGCTTTAATTGAGAAAAAAATTATTTGCATGCACGGTGGTATTGGTCGTTCAATAAATCATGTAGAACAGATTGAAAACATTCAGCGTCCAATTCCAATGGAAGCAGGATCAATTGTGCTTATGGATCTATTGTGGTCTGATCCTACAGAGAATGACAGCGTGGAAGGACTGCGACCAAATGCTAGAGGTCCTGGATTAGTTACTTTTGGGCCCGATCGGGTCATGGAATTTTGTAACAACAATGATCTTCAGCTGATTGTTCGTGCACATGAATGTGTGATGGATGGGTTTGAGCGTTTTGCCCAGGGACATTTGATCACACTTTTTTCAGCGACTAATTATTGTGGTACCGCAAATAATGCTGGGGCAATATTAGTTTTAGGTAGAGACCTTGTTGTGGTTCCTAAACTAATCCATCCATTACCACCAGCAATTTCTTCACCAGAAACATCACCAGAACCTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCGCCAACGCCAACAAGAGGCCGTCCCCCAGTAACAAACGACCGAGGTTCGCTCGCTTGGATATAG 3012 0.494 MDVDSSMVPETDHDPAVQNHAADDPAPDAAEGEQLGEPPSSGGGSPEQTQPAPASAPQSPVVGPRLAPSYTVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAATGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQWPRWHRVSVQGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLSSAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSSRTGRYSADAAGGDAAVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTAAASHAAAAAAASASNVQAGRLPGRYGFADDRTRETMPEAAADGSVVLGNPVAPPMNGDIYTDISTENAMLQGPRRTAKGVEYLVEASAAEAEAISAALAAAKARQENGEVELPDRDRGAEATPSGKQTSSLIKPDSAGSNNITPGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVGYGTPENATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAEQIFSSEPSVLQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETITLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWTWHRINKLFNWLPLAALIEKKIICMHGGIGRSINHVEQIENIQRPIPMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPEPHIEDTWMQELNANRPPTPTRGRPPVTNDRGSLAWI* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1597 1003 ProSitePatterns Serine/threonine specific protein phosphatases signature. 769 774 IPR006186 GO:0016787
Gso12g1597 1003 MobiDBLite consensus disorder prediction 563 584 - -
Gso12g1597 1003 PRINTS Serine/threonine phosphatase family signature 700 727 IPR006186 GO:0016787
Gso12g1597 1003 PRINTS Serine/threonine phosphatase family signature 735 762 IPR006186 GO:0016787
Gso12g1597 1003 PRINTS Serine/threonine phosphatase family signature 768 792 IPR006186 GO:0016787
Gso12g1597 1003 PRINTS Serine/threonine phosphatase family signature 806 832 IPR006186 GO:0016787
Gso12g1597 1003 PRINTS Serine/threonine phosphatase family signature 896 916 IPR006186 GO:0016787
Gso12g1597 1003 PRINTS Serine/threonine phosphatase family signature 918 934 IPR006186 GO:0016787
Gso12g1597 1003 MobiDBLite consensus disorder prediction 548 562 - -
Gso12g1597 1003 CDD MPP_Bsu1_C 652 954 IPR041758 -
Gso12g1597 1003 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 1003 - -
Gso12g1597 1003 MobiDBLite consensus disorder prediction 979 1003 - -
Gso12g1597 1003 MobiDBLite consensus disorder prediction 41 56 - -
Gso12g1597 1003 MobiDBLite consensus disorder prediction 1 65 - -
Gso12g1597 1003 Gene3D - 637 980 IPR029052 -
Gso12g1597 1003 PIRSF STPPP_BSU1 39 1003 IPR012391 GO:0004721|GO:0009742
Gso12g1597 1003 Pfam Calcineurin-like phosphoesterase 700 907 IPR004843 GO:0016787
Gso12g1597 1003 Pfam Kelch motif 328 374 IPR011498 GO:0005515
Gso12g1597 1003 Gene3D - 64 265 IPR015915 GO:0005515
Gso12g1597 1003 Gene3D - 266 458 IPR015915 GO:0005515
Gso12g1597 1003 SMART pp2a_7 672 956 IPR006186 GO:0016787
Gso12g1597 1003 Pfam Galactose oxidase, central domain 222 275 - -
Gso12g1597 1003 SUPERFAMILY Metallo-dependent phosphatases 657 962 IPR029052 -
Gso12g1597 1003 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1003 - -
Gso12g1597 1003 SUPERFAMILY Kelch motif 142 431 IPR015915 GO:0005515
Gso12g1597 1003 MobiDBLite consensus disorder prediction 546 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1597 Gso-Chr12 39503663 39515553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1597 664 899 Calmodulin-binding Proteins AT5G63870 29.412 4.71e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1597 - - gmx:100790406 1889.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1597 12 39503663 39515553 Gso11g3257 11 48357809 48368342 GST
Gso12g1597 12 39503663 39515553 Gso12g0777 12 8028120 8042455 PCT
Gso12g1597 12 39503663 39515553 Gso11g1332 11 14729711 14744206 PCT
Gso12g0777 12 8028120 8042455 Gso12g1597 12 39503663 39515553 PCT
Gso11g1332 11 14729711 14744206 Gso12g1597 12 39503663 39515553 PCT