Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1593 ATGGACGAAATTGAAATCCCTGCCCATTTCCTCTGCCCCATTTCCCTTCAACTCATGAGGGACCCTGTCACGGTTTGCACAGGAATCACTTATGATAGAGAAAACATAGAGAGATGGTTATTTTCATGCAAGAACAACACATGCCCCGTTACTAAGCAGTGCCTATTAGACCATGGTCTCACTCCAAACCACACTCTACGCAGGCTGATCCAATCCTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCTACTCCAAAGTCACCAATAGACAAAACTCAGATTGTGAAACTCCTCACAGAAGCAAAAAGGTTCCCAGAGAAGCAACTCAAGTGCCTCACAAGGCTTCGATCCGTTGCCTTTGAAGGCCAAAGGAACAAAACATGTTTAGAGTCTGCTGGAGTAATAGAATTCTTGGCCACAACAATGAAGAACAACAACACACAAGAAGACTCAACTGTTCTCAGTGAAGCAGCTATTGAAGTCTTGTTCCACCTCAATCTCTCCGAGGCTCGACTTAAAACTCTGATTAACAACGAGGAATTTCATTTTATCGAGTCATTGTTTCATGTGCTGAGGCTTGGAAACTACCAATCTAGAGTCTATGCTACAATGCTGCTTAGATCAGCATTTGAGGTAGCTGATCCAATCCAATTGATCAGTGTCAAAACCACGCTGTTTGTGGAAATCATGCGCGTGCTTTGCGATCAGATCTCGCATCAGGCTTCAAAGGCTGCATTGAAGCTCATTGTGGAGCTCTTTCCGTGGGGAAGAAACAGGATCAAAGGGGTCGAGGGTGGTACAGTTTCGGTCCTCATCGAGCTACTTCTCGGCACCTCGGAAAGAAGAACATGTGAACTCATTTTGATAGCTTTGGATCAGCTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGGGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCATGTGGCTAGTGAAAGAGGGGTTAGAATTTTGGCCTCTATTTGTAGGTATTCTGCCAATGCTAGAGTGCTTCATGAAATGTTGCAGGTTGGGGCTGTGTCCAAGTTGTGTTTGGTGCTTCAAGTGAATTGCGGTTTTAAGACTAAGGAGAGAGCCAAAGAGAAATGGGAGTTAGATTTGAGGGTGTAA 1164 0.4545 MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRENIERWLFSCKNNTCPVTKQCLLDHGLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPIDKTQIVKLLTEAKRFPEKQLKCLTRLRSVAFEGQRNKTCLESAGVIEFLATTMKNNNTQEDSTVLSEAAIEVLFHLNLSEARLKTLINNEEFHFIESLFHVLRLGNYQSRVYATMLLRSAFEVADPIQLISVKTTLFVEIMRVLCDQISHQASKAALKLIVELFPWGRNRIKGVEGGTVSVLIELLLGTSERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSHVASERGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCGFKTKERAKEKWELDLRV* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1593 387 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Gso12g1593 387 Gene3D - 95 380 IPR011989 -
Gso12g1593 387 PANTHER OS11G0573500 PROTEIN 1 386 - -
Gso12g1593 387 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Gso12g1593 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Gso12g1593 387 SUPERFAMILY RING/U-box 3 77 - -
Gso12g1593 387 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Gso12g1593 387 PANTHER WDSAM1 PROTEIN 1 386 IPR045185 GO:0061630
Gso12g1593 387 SUPERFAMILY ARM repeat 97 365 IPR016024 -
Gso12g1593 387 CDD RING-Ubox_PUB 10 53 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1593 Gso-Chr12 39468556 39470658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1593 2 387 U-box Gene Family AT2G35930 55.641 7.44e-152 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1593 - - gmx:100786877 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1593 12 39468556 39470658 Gso11g3261 11 48401419 48403106 GST