LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g1592	ATGCTGTATGAAACTGATTATACAATGACAGAAATTGAAATTCCTCAGTTTTTTCTTTGTCCTATTTCACTTCAGATCATGAAGGACCCTGTGACAACCGTTAGGGGGATAACATACGACAGAGAAAGCATCGAGAAATGGTTGCTAAAAGCGAAAGATTGCACTTGTCCAATCACAAAGCAACCATTGCCACGAAGCCCAGAGTTCTTAACCCCAAACCACACACTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCAAATGAAGCCAATGGCGTAGACCAAATTCCAACCCCGAAATCCCCTCTTAGCAATTCCAACGCTGAGAAGCTCGTGAAGGATCTCGAAGTTTCTTCTCGTTTTCAAAAGGCGTTGGAGAAATTGCACGCTCTTGCAATGGAGAACGAAAGGAACAGAAGGTGCATGGCTTCTGCGGGTGTAGCAGAAGCTATGGTGCACGTGATCACAAAGATTTTCAAGCAAGGTAACAAAACGACGCCGTGCGTTGAAGAAGCTCTTAGAATTCTTCGTTTGCTTTGGAGCAGTGCCAATATGGTCGACAGCAACAACAACAACAACAACAACAACATTAAGCGCATGGTGGGTGAGAACTTTGACTTTCTCAACTCTTTGACTTGGGCTTTGCAGCTTCAAACCAAGAACAACGTCAAATTAACAAACGAAGCAATGCCAATATTGAAACTGGTAATTGAAGCCAAAGACTCAACCGCTTTAGGGAACTTGAAGCTTGAATTCTTCAAAGTTGTTGTGAGTGTGTTGAAAAATAGAGAACTCTCTCAGCAAGCTGTTAAATCCGCGTTGCATGTTCTTATAGAAACGTGTCCTTTGGGGAGAAACAGAATGAAGATAGTTGAAGGAGGTGCAGTGATTGAACTCATTGAGCTTGCACTTGAAAAACCAGAAAAGAATATGACAGAACTCGTATTTATTCTCTTGGCGAATCTTTGTTCTTGTGCTGACGGGAGAGAACAGTTTCTGCAGCATGCTGCAGGCATTGCTGTGGTTTCTAAGAGGATCCTTAGGGTTTCACCAACCACCAATGATCGAGCTCTTCATATATTTTCCTTGGTTTCCAAGTTCTCGGCTTCGAATGAGGTTGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGTTACACTCCAAAACATGGAACAATTCTCCCTGTATTCAAGTGTATTTGTTAACCAGATTCCATAGGTGA	1287	0.4297	MLYETDYTMTEIEIPQFFLCPISLQIMKDPVTTVRGITYDRESIEKWLLKAKDCTCPITKQPLPRSPEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNSNAEKLVKDLEVSSRFQKALEKLHALAMENERNRRCMASAGVAEAMVHVITKIFKQGNKTTPCVEEALRILRLLWSSANMVDSNNNNNNNNIKRMVGENFDFLNSLTWALQLQTKNNVKLTNEAMPILKLVIEAKDSTALGNLKLEFFKVVVSVLKNRELSQQAVKSALHVLIETCPLGRNRMKIVEGGAVIELIELALEKPEKNMTELVFILLANLCSCADGREQFLQHAAGIAVVSKRILRVSPTTNDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARGVLRLHSKTWNNSPCIQVYLLTRFHR*	429

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso12g1592	428	ProSiteProfiles	U-box domain profile.	13	90	IPR003613	GO:0004842\|GO:0016567
Gso12g1592	428	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE PUB24	11	426	-	-
Gso12g1592	428	SUPERFAMILY	RING/U-box	5	92	-	-
Gso12g1592	428	Gene3D	-	109	415	IPR011989	-
Gso12g1592	428	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	3	95	IPR013083	-
Gso12g1592	428	SUPERFAMILY	ARM repeat	221	405	IPR016024	-
Gso12g1592	428	Pfam	U-box domain	14	88	IPR003613	GO:0004842\|GO:0016567
Gso12g1592	428	CDD	RING-Ubox_PUB	18	61	IPR045210	-
Gso12g1592	428	SMART	Ubox_2	17	83	IPR003613	GO:0004842\|GO:0016567
Gso12g1592	428	PANTHER	WDSAM1 PROTEIN	11	426	IPR045185	GO:0061630

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g1592	Gso-Chr12	39465347	39466852	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso12g1592	11	418	U-box Gene Family	AT2G35930	43.447	4.07e-108	323

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g1592	-		-	gmx:100787419	808.135

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Gso12g1592	12	39465347	39466852	Gso11g3262	11	48410209	48411761	GST
Gso12g1592	12	39465347	39466852	Gso12g0775	12	7958073	7959578	PCT
Gso12g1592	12	39465347	39466852	Gso11g1338	11	14940408	14941999	PCT
Gso12g0775	12	7958073	7959578	Gso12g1592	12	39465347	39466852	PCT
Gso11g1338	11	14940408	14941999	Gso12g1592	12	39465347	39466852	PCT

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