Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1592 ATGCTGTATGAAACTGATTATACAATGACAGAAATTGAAATTCCTCAGTTTTTTCTTTGTCCTATTTCACTTCAGATCATGAAGGACCCTGTGACAACCGTTAGGGGGATAACATACGACAGAGAAAGCATCGAGAAATGGTTGCTAAAAGCGAAAGATTGCACTTGTCCAATCACAAAGCAACCATTGCCACGAAGCCCAGAGTTCTTAACCCCAAACCACACACTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCAAATGAAGCCAATGGCGTAGACCAAATTCCAACCCCGAAATCCCCTCTTAGCAATTCCAACGCTGAGAAGCTCGTGAAGGATCTCGAAGTTTCTTCTCGTTTTCAAAAGGCGTTGGAGAAATTGCACGCTCTTGCAATGGAGAACGAAAGGAACAGAAGGTGCATGGCTTCTGCGGGTGTAGCAGAAGCTATGGTGCACGTGATCACAAAGATTTTCAAGCAAGGTAACAAAACGACGCCGTGCGTTGAAGAAGCTCTTAGAATTCTTCGTTTGCTTTGGAGCAGTGCCAATATGGTCGACAGCAACAACAACAACAACAACAACAACATTAAGCGCATGGTGGGTGAGAACTTTGACTTTCTCAACTCTTTGACTTGGGCTTTGCAGCTTCAAACCAAGAACAACGTCAAATTAACAAACGAAGCAATGCCAATATTGAAACTGGTAATTGAAGCCAAAGACTCAACCGCTTTAGGGAACTTGAAGCTTGAATTCTTCAAAGTTGTTGTGAGTGTGTTGAAAAATAGAGAACTCTCTCAGCAAGCTGTTAAATCCGCGTTGCATGTTCTTATAGAAACGTGTCCTTTGGGGAGAAACAGAATGAAGATAGTTGAAGGAGGTGCAGTGATTGAACTCATTGAGCTTGCACTTGAAAAACCAGAAAAGAATATGACAGAACTCGTATTTATTCTCTTGGCGAATCTTTGTTCTTGTGCTGACGGGAGAGAACAGTTTCTGCAGCATGCTGCAGGCATTGCTGTGGTTTCTAAGAGGATCCTTAGGGTTTCACCAACCACCAATGATCGAGCTCTTCATATATTTTCCTTGGTTTCCAAGTTCTCGGCTTCGAATGAGGTTGTGCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGTTGCAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAGGTGTACTTAGGTTACACTCCAAAACATGGAACAATTCTCCCTGTATTCAAGTGTATTTGTTAACCAGATTCCATAGGTGA 1287 0.4297 MLYETDYTMTEIEIPQFFLCPISLQIMKDPVTTVRGITYDRESIEKWLLKAKDCTCPITKQPLPRSPEFLTPNHTLRRLIQAWCSANEANGVDQIPTPKSPLSNSNAEKLVKDLEVSSRFQKALEKLHALAMENERNRRCMASAGVAEAMVHVITKIFKQGNKTTPCVEEALRILRLLWSSANMVDSNNNNNNNNIKRMVGENFDFLNSLTWALQLQTKNNVKLTNEAMPILKLVIEAKDSTALGNLKLEFFKVVVSVLKNRELSQQAVKSALHVLIETCPLGRNRMKIVEGGAVIELIELALEKPEKNMTELVFILLANLCSCADGREQFLQHAAGIAVVSKRILRVSPTTNDRALHIFSLVSKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARGVLRLHSKTWNNSPCIQVYLLTRFHR* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1592 428 ProSiteProfiles U-box domain profile. 13 90 IPR003613 GO:0004842|GO:0016567
Gso12g1592 428 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 11 426 - -
Gso12g1592 428 SUPERFAMILY RING/U-box 5 92 - -
Gso12g1592 428 Gene3D - 109 415 IPR011989 -
Gso12g1592 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 95 IPR013083 -
Gso12g1592 428 SUPERFAMILY ARM repeat 221 405 IPR016024 -
Gso12g1592 428 Pfam U-box domain 14 88 IPR003613 GO:0004842|GO:0016567
Gso12g1592 428 CDD RING-Ubox_PUB 18 61 IPR045210 -
Gso12g1592 428 SMART Ubox_2 17 83 IPR003613 GO:0004842|GO:0016567
Gso12g1592 428 PANTHER WDSAM1 PROTEIN 11 426 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1592 Gso-Chr12 39465347 39466852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1592 11 418 U-box Gene Family AT2G35930 43.447 4.07e-108 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1592 - - gmx:100787419 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1592 12 39465347 39466852 Gso11g3262 11 48410209 48411761 GST
Gso12g1592 12 39465347 39466852 Gso12g0775 12 7958073 7959578 PCT
Gso12g1592 12 39465347 39466852 Gso11g1338 11 14940408 14941999 PCT
Gso12g0775 12 7958073 7959578 Gso12g1592 12 39465347 39466852 PCT
Gso11g1338 11 14940408 14941999 Gso12g1592 12 39465347 39466852 PCT