Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1591 ATGGCGATGTACTTTCACGGAAGCACTTCGGAAATTCAACCTTCTTCTGCAGATGGCGGCTTGCAAACGCTTTACCTTATGAACCCAACTTACGTACCCTACGCTGACGCGCCGCACCACCCAACAGCGCTCCTCGTCAATCCCAACGCGCTCAACCTCGCGAATATCCCCCACGCGCCGCCAGTGTCACCAAACCATCAGCAGCAGCAGCACGTGATTCACGGCATGACAAACATCCTCGGATCCGGCAATTCCGATGACCACTCCCGACCGTCCTTGTTCGGAGAAAACATCGCCTCCTTCCACGGATTCTCCGGCGGCGGAAGCGCCTCCGCCACAGCCCCTCGCCTTCACTATAACCTCTGGGGTCCGGTGGTTGATCATCCGGGAACGCCGTCTAGCAGCTCCGGTGGCGGTGGTTTCCGGCGGTCGGGTCAGCAAGGTTTATCTCTCAGCCTTTCCTCCCAGCAAACAAATTTTAGATCAGTTTCCGGCGAGCTTGACGTGGCCGGACAGGGCAACGTCGCCGGAATTGGGAACTCGCCGACGTCGGCATCTACCGGTGTTTCAGGTGTTATTATGGGGTCGAACTATTTGAAAGCTGCACAGGAGCTTCTGGATGAAGCTGTGAACGTGGGAAAAGGAATCTACAAAGAGGAAAAATTTGCAGAGAAGGTGAAAGCAAATAGGGAATCTACTAATTCTGGAGCTGCTGGCGGTGGTGATGGTTCAAGTGGTGGAGGAGAAAACAGTGCAGGGAAACAAGTTGTCGAACTCAGCACCGCTCAGAGGCAAGAACTTCAGATGAAGAAGTCTAAGCTTGTCTCCATGCTCGATGAGGTAGAACAAAGGTACAGACAATATCACCACCAAATGCAAATTGTGGTATCATCATTTGAGCAAGCAGCGGGTTATGGGGCGGCAAAATCTTACACTGCCCTTGCCCTAAAAACTATCTCAAAGCAATTCAGGTGCCTGAAAGATGCAATCTCTGCACAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGCTTAGGAGTTAAAGTAGAAGGGTCAAGGCTTAGGTATGTTGACCACCATCTTCGGCAACAAAGGGCACTTCAGCAACTAGGAATGATTCAGCCCAATGCATGGAGGCCCCAGAGAGGCTTGCCTGAACGAGCTGTTTCCATTCTTCGGGCTTGGCTTTTTGAGCATTTCCTTCACCCATATCCAAAGGACTCCGATAAAGTTATGCTTGCTAAACAAACTGGACTTTCTAGGAGCCAGGTGTCAAACTGGTTTATCAATGCCCGAGTTCGGCTTTGGAAGCCAATGGTTGAAGAAATGTACTTGGAAGAAATCAAGGAACATGAACAAGGTAATGCCTCAGAAAACACCAAATCAAAGGAATCGAGCAAGGAGTTGGGTTCAACAGCAAATGTTGCACCCGAATCAGGTGCCATTAAACTCGATCATCTCCAATCAAAGCAAGAAAGCTTCAAACACCAAAACACTTCTCCAACCGAGATCTCAACAAACTCTTCAATGTCTCCAATGGGAGGGTCCCTTCAATCCCCCTCTGGTTTCCATCTTGCAGGATCATCTGACATGCAAATTAGGAGTCCAAAGAAACCAAGAAGTTCGGAAATTCAAAACTCTCCAAGTAGTATACTCTCAGTGGGCATGGAAATGAAGCATAATAATAATGGTGATCATGCAAATAATAGAGAAGCCAACAACACAAAGTTTGGCAATGAAAGGCACCACCAGAAAGATGGATACCCTTTGATGACTAGCAATGCAAACCATGGTGGAGGGTTTGGAGCGTTCACCATGGAAGACATGGGAAGCAGATTTAATGTCACTACTGAGCAACTGGCTTCAAGGTTCCATGGAAATGGTGTTTCTCTCACACTTGGACTTCCCCACAATGAGAACCTTTCTATGCCAGGAACTCAACAACATGGATTTCTCTCACAGAATATACACTTGGGAAGGAGACTTGAAATGGGAACAAATGGAAATGAGTTTTGTGCTATCAACACTCCACCTTCTTCTCACTCAGGAACCACTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGTTGCTCATCAGTTATTGCCAGATTTCGTGGCCTAA 2133 0.4787 MAMYFHGSTSEIQPSSADGGLQTLYLMNPTYVPYADAPHHPTALLVNPNALNLANIPHAPPVSPNHQQQQHVIHGMTNILGSGNSDDHSRPSLFGENIASFHGFSGGGSASATAPRLHYNLWGPVVDHPGTPSSSSGGGGFRRSGQQGLSLSLSSQQTNFRSVSGELDVAGQGNVAGIGNSPTSASTGVSGVIMGSNYLKAAQELLDEAVNVGKGIYKEEKFAEKVKANRESTNSGAAGGGDGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVSMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLSRSQVSNWFINARVRLWKPMVEEMYLEEIKEHEQGNASENTKSKESSKELGSTANVAPESGAIKLDHLQSKQESFKHQNTSPTEISTNSSMSPMGGSLQSPSGFHLAGSSDMQIRSPKKPRSSEIQNSPSSILSVGMEMKHNNNGDHANNREANNTKFGNERHHQKDGYPLMTSNANHGGGFGAFTMEDMGSRFNVTTEQLASRFHGNGVSLTLGLPHNENLSMPGTQQHGFLSQNIHLGRRLEMGTNGNEFCAINTPPSSHSGTTYESIDIQNRKRFVAHQLLPDFVA* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1591 710 Gene3D - 383 445 - -
Gso12g1591 710 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 7 665 - -
Gso12g1591 710 SUPERFAMILY Homeodomain-like 381 446 IPR009057 -
Gso12g1591 710 SMART HOX_1 380 444 IPR001356 GO:0003677
Gso12g1591 710 MobiDBLite consensus disorder prediction 453 479 - -
Gso12g1591 710 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Gso12g1591 710 MobiDBLite consensus disorder prediction 493 588 - -
Gso12g1591 710 MobiDBLite consensus disorder prediction 495 559 - -
Gso12g1591 710 MobiDBLite consensus disorder prediction 128 157 - -
Gso12g1591 710 Coils Coil 264 284 - -
Gso12g1591 710 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Gso12g1591 710 MobiDBLite consensus disorder prediction 453 467 - -
Gso12g1591 710 Pfam Associated with HOX 192 331 IPR006563 -
Gso12g1591 710 MobiDBLite consensus disorder prediction 129 157 - -
Gso12g1591 710 SMART prehox3 187 332 IPR006563 -
Gso12g1591 710 MobiDBLite consensus disorder prediction 228 254 - -
Gso12g1591 710 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 7 665 - -
Gso12g1591 710 CDD homeodomain 380 441 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1591 Gso-Chr12 39441674 39446903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1591 1 710 Homeobox Transcription Factor Family AT2G35940 44.459 2.72e-142 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso12g1591 POX 1.1e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1591 - - gmx:100779075 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1591 12 39441674 39446903 Gso11g3263 11 48416062 48421142 GST
Gso12g1591 12 39441674 39446903 Gso12g0773 12 7917775 7923441 PCT
Gso12g1591 12 39441674 39446903 Gso11g1340 11 14984472 14990059 PCT
Gso12g0773 12 7917775 7923441 Gso12g1591 12 39441674 39446903 PCT
Gso11g1340 11 14984472 14990059 Gso12g1591 12 39441674 39446903 PCT