Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1590 ATGGGGTTTATGTTGAAAGAAGCTTTGAGGACTCTCTGTGGTCGGAATCAGTGGTCTTATGCTGTGTTCTGGAAGATCGGTTGCCACAATTCCAAGCTATTAATTTGGGAAGAATGCTATTATGAACCTTTACCATGCCCTCCGCACATGTTTGGGATGCCTGATTTACCTTACCAAAATGGGGAAGGATGCTGGTTTTCTTTAGAGTATCGGTCATCGCAGCTTGGGATTCAAGAGGATGACCAAGTCTCTTCTTTGATTAACAAAATGACAGTAAACAATTCAGTTATCATTGCAGGTGAAGGTATAGTTGGACGGGCTGCATTTACAGGCAGCCATCAGTGGATTCTTTTGAACAATTTCACTAAAGATGCATATCCTCCACAGGTATATGCTGAGGTACATCACCAATTTTCAGCTGGAATACAGACAGTAGCAGTTATTCCTGTGCTTCCTCATGGGGTTGTTCAACTTGGTTCTTTCTTTCCTATAATTGAGAATATGGGATTTGTGAAAGATGTGAAGAGCTTGATCTTGCAATTGGGATGTGTTTCTGGCGCCCTTCTATCTGCAGACTATTCAGAAAAACTTTCTAATGAAAGACTTGCTGGACCTCCTATTGCTGGTGTACCTGTGTCTGTCGATCGACCTGTCATTACCTCAAACTGTCCTCCCTCAGTAACTACTGGCTCCAATCAGCAAAATAATTCATCTCATGCTTCAATGCCTTGTCCTCTAATGGAAGACACAAATACTTGCCAGGGTTCTGCATTGACACCCCTAACCCGTAAACTGAGCCAGATATCCAATAAACCTTGCCAACCAAAGGTTATTCGAATGAGTAAAACAAGCTTTGCTAGCCAACAAGAGAATAGAGCTGTCGAAGCTGAAGTAATACCCTCAGATCTTGATTCATGCCTGCAGCAGCATTCTGTTTCATATAATGCAAGATCTGCATTCAGTAACATAACTGGTTTGGGGTCTCTTGGTCAATCTGGTCTAAGTGTTGATAATCTTGCATTAATGGAGCAACAAATCTTATCAGGCATTGGGAATCGAGATAATGTTAACCCTTGTGTAAATGCCTCAAGTTCCTTGAACATGTCTCAACTAAAAACAGATGGAGACCATCTACTTGGCCACAATATGAGTTTTGACAGTACTTCACTAGTGGGAGGAGTCCCACTACATGGTGGGATGAGTACTCTTTTGAGTTCAACTCTGATTACTAGTTCTGGTTCAAAATCTCCCCGAGCATCCACAGCTGTTTTATCTGGAGTAGGAGTTGGGATTGGACCTCAAAATTGTGTTTCTTCAACTAAAGCAAGGGTTTGTTCTTTGGCAAATTTGACTAGTCAACCAGGCACCTTCCCCAAGCATGTAGAAGGTTCTGATCAGAAGATTCTCCCTGTAGATTTAAAGTGTGCTTCAACAAATCAAAAGATAGACTATGATATGCTTCAGGCCCCTAATCTCCCTTCTTTCCAAGTTGAGGAACATGTGCCCATTAATAGTCAAATCCCTGGTTTTGCCCACGATTGCCTTCTTAAAGATGGTAGTAGTCAATCTATGATGACAATGGATCCTAAACACAAACTAGATTGTGCTAAACCTCCATCGGGTGATGACTTGTTCGATGTTTTAGGGGTGGATTTGAAAAACCAATTGCTGAATGGAAACTGGGATAATCTCTTTACTTATGAATCAGATGCTAATGCAGAAAATATGGACAAAAAGATAGCACCTATGAACATGCAAGGTGCAACAACTAATCCTGATATTTATTCGGTTAAAGAAGCAATATCAGACTGCGGCATCTTTTCTGGGATGGGAACAGACCACCTCTTGGATGCCGTGGTCTCCAAAGCCAAATCTGTTGTGAAACAGGATTCTGATGACATGTCTTGCAGGACAACATTGACAAGGAATAGTACTTCCTCTGTTCCTTCTCCTGCACGGAGGACGGTAGTGTCTGGTCATTTCCAAGGGGGATTATTTGATTTGCCTAAGAATGATGGTAAAACAGGTGCCACAGAAACTAGTTTTCTTAGGTCTGGATGTAACAAGGATGATGCTGGAAACTGTTCTCAAACTAGTTCTGTTTATGGCTCTCAACTTAGTTCATGGGTTGAGAATAGTGGGAGTGTGAAATGTGAGAATAGTGCTTCAACTAGATACTCAAAGAGGCCAGATGAAGCTTGCAAGCCAAATCGTAAAAGGCTTAAACCTGGAGAGAATCCCAGGCCTCGACCGAAAGATCGTCAAATGATTCAAGATCGAGTGAAAGAGTTACGAGAAATTGTGCCAAACGGAGCAAAATGTAGCATAGATGCACTTTTGGAACGGACCATTAAGCATATGCTTTTCTTACAAAGTGTGACAAAGCATGCTGACAAGCTGAAACAAACAGGGGAGTCTAAGATTATTAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGTGGGGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATTGTAGTTGAGGATCTGAATCCACCTCGTCAGATGCTAGTGGAGATGCTTTGTGAGGAACGAGGTTTCTTTTTGGAAATAGCTGACTTAATCAGAGGATTAGGTTTAACCATCTTAAAGGGGGTAATGGAAGCTCACAATGACAAAATCTGGGCGCGCTTTGCTGTTGAGGCAAACAGGGATTTAACAAGGATGGAAATATTTATGTCACTAGTTCGTCTTTTGGAGAAAACGGTGAAGGGCAACACATCTCCATCCAACGCAATTGATAACATGGTGTATCACTCTTTCCCACAGGCTGCTCAGATACCAGTAACCGGAAGGCCTAGTAGTTTGCAGTGA 2859 0.4208 MGFMLKEALRTLCGRNQWSYAVFWKIGCHNSKLLIWEECYYEPLPCPPHMFGMPDLPYQNGEGCWFSLEYRSSQLGIQEDDQVSSLINKMTVNNSVIIAGEGIVGRAAFTGSHQWILLNNFTKDAYPPQVYAEVHHQFSAGIQTVAVIPVLPHGVVQLGSFFPIIENMGFVKDVKSLILQLGCVSGALLSADYSEKLSNERLAGPPIAGVPVSVDRPVITSNCPPSVTTGSNQQNNSSHASMPCPLMEDTNTCQGSALTPLTRKLSQISNKPCQPKVIRMSKTSFASQQENRAVEAEVIPSDLDSCLQQHSVSYNARSAFSNITGLGSLGQSGLSVDNLALMEQQILSGIGNRDNVNPCVNASSSLNMSQLKTDGDHLLGHNMSFDSTSLVGGVPLHGGMSTLLSSTLITSSGSKSPRASTAVLSGVGVGIGPQNCVSSTKARVCSLANLTSQPGTFPKHVEGSDQKILPVDLKCASTNQKIDYDMLQAPNLPSFQVEEHVPINSQIPGFAHDCLLKDGSSQSMMTMDPKHKLDCAKPPSGDDLFDVLGVDLKNQLLNGNWDNLFTYESDANAENMDKKIAPMNMQGATTNPDIYSVKEAISDCGIFSGMGTDHLLDAVVSKAKSVVKQDSDDMSCRTTLTRNSTSSVPSPARRTVVSGHFQGGLFDLPKNDGKTGATETSFLRSGCNKDDAGNCSQTSSVYGSQLSSWVENSGSVKCENSASTRYSKRPDEACKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIINKEGGLLLKDNFEGGATWAYEVGSQSMVCPIVVEDLNPPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEAHNDKIWARFAVEANRDLTRMEIFMSLVRLLEKTVKGNTSPSNAIDNMVYHSFPQAAQIPVTGRPSSLQ* 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1590 952 MobiDBLite consensus disorder prediction 720 756 - -
Gso12g1590 952 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 952 IPR043561 GO:0003700|GO:0006355
Gso12g1590 952 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 177 IPR025610 -
Gso12g1590 952 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 952 - -
Gso12g1590 952 CDD bHLH_AtLHW_like 745 814 - -
Gso12g1590 952 MobiDBLite consensus disorder prediction 724 756 - -
Gso12g1590 952 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 741 790 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1590 Gso-Chr12 39393878 39401548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1590 529 946 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.133 5.84e-117 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1590 - - gmx:100787748 1874.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1590 12 39393878 39401548 Gso11g3264 11 48459878 48467172 GST
Gso12g1590 12 39393878 39401548 Gso12g0772 12 7841134 7848368 PCT
Gso12g1590 12 39393878 39401548 Gso11g1341 11 15060441 15067672 PCT
Gso12g0772 12 7841134 7848368 Gso12g1590 12 39393878 39401548 PCT
Gso11g1341 11 15060441 15067672 Gso12g1590 12 39393878 39401548 PCT