Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1583 ATGCGTGTTTCCTGGCAAACCATGGAAGGCGTTCAGTTAGAAAAAGTAGTCTTCTTGTTATGTTTTGGTCTAATAATTACAATGAGTTATGGGGCTACAAACCCAAATGATGTCAAAGTTTTGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTTTGAAGTGGCCAGAGGAGGGAGATGATCCCTGTGGTCCTCCTTTATGGCCTTTTGTGTACTGTTCTGGAGATAGAGTAACTCAGATTCAGGCTAAGGATCTTGGTCTTAGAGGGACATTGCCTCACAACTTTAACCAACTCTCAGAACTCTTCAATTTGGGTCTCCAACGCAACAACCTTAGTGGGATGTTGCCTACTTTTAGTGGATTATCCAAATTGAAATATGCTTTCTTGGATTATAATGCATTTGATGCAATCCCGGCTGATTTCTTTGATGGACTTAGCAGTCTTATGGTCTTGACATTGGAAAAAAATCCACTGAATGTAAGTAGTGGCTGGTCGTTTCCCATGGATTTAGAAAAATCAGTTCAATTAACGAATCTTTCTTTGGCGTTTTGTAATTTGGTTGGACCGTTGCCGGATTTTCTGGGCAGGTTGCCATCCCTCACACAACTGAGCCTTTCAGGCAACAAACTGACTGGTGCCATTCCTGCTACTTTTGCTCAATCTTCAATCCAGGATTTGTGGTTAAATAATCAAGAAGGTGGAGGGTTGAGTGGTCCTATTGATGTTATTGCTTCAATGATTTTACTTAGACATGTTTTGCTACATGGAAACCAGTTCACTGGGCCAATTCCTCAGAATATTGGAAATCTTACTTCCTTGCAGGAACTCAATCTCAATAGTAATCAACTTGTTGGCTTGATTCCAGAGTCCCTAGCACATATGGAACTTGAGATCCTAGTGTTAAATAATAACATGCTAATGGGTCCAATACCAGAATTTAAGGCTGCCAATGTTTCTTATGATAACAACTTATTTTGTCAACCGGAGCCTGGGCTTGAATGTTCCCCTCAAGTTGCTGCACTACTGGATTTTCTGGACAAGCTGAATTACCCTTCATTTCTCATATCTGATTGGGTTGGTGATGAACCATGCACACGCAGCACAGGGTCATGGTTTGGATTGAGCTGCAATTCCAACTCAGAGGTATCTGTTATCAATCTACCTAGACACAAGCTAAATGGTACTCTAAGTCCTTCACTTGCTAAGTTAGATTCACTCCTTGAAATTAGGCTTGCAGGAAACAATATAACCGGTTCAGTTCCCGGTAATTTTACCGACTTAAAATCTTTAAGGTTGTTGGACTTAAGTGATAACAACCTTGAGCCTCCATTACCAAAATTTCATAATGACCCGAAGGTTGTCACTGTGGGTAACCCTCTTCTTCCTAACCAAACTGGAGGAAGTCCTAGTCCTATGCCTATTAACAACCCACCTTCACCACAGAATCCATCACATCCTCCATCCTCTCATGAGTCACCTGTTCCAGATCAGAGTTCAAGATCAAATCAATCCAAACCAAATGACTTGAAAATATTCAAAGCAGTAGGAATTGTGGCTGGAGTTGCTGTGTTTGCAGTTGTAGCTCTTTTGGTTGTTTATCCCTTCTTATGTTGCAGGAAGAACAAAAAAGCCTCCTTGGATGCTCCAAGTTCCATCATGGTTCACCCACGCGATCCATCTGATTCGGATAACATGGTTAAAATTACGGTTTCAAACGCCACTGGAAGTTTGTCAACAAAGACTGGGACAAGTTCTCAGAGTAACATTAGTGGTGAAACTCAAAACTCTCACATAATTGAGGATGGAAACCTTGTCATTTCTATACAAGTACTACGCAAGGTTACCAATGATTTTGCTTCAGAAAATGAACTAGGCCGTGGAGGGTTTGGGACTGTTTACAAGGGAGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGCATGGGGTTATTAGCAGTAAGGCATTGGAGGAGTTTCAAGCTGAAATAGCTGTTCTTTCCAAGGTCCGGCACCGGCATCTGGTATCCTTGTTGGGGTATTCCATTGATGGCAATGAAAGACTTTTGGTTTATGAATATATGTCTCTTGGAGCTCTAAGCCAGCATCTTTTTCATTGGAAAAGCTTGAAGTTGGAGCCTTTGTCTTGGTCACAGAGGCTTGCAATAGCACTAGATGTTGCTAGAGGGATGGAGTACCTTCACAGTCTTGCCCGTCAGACCTTTATTCATCGAGATCTTAAATCTTCTAATATCTTATTGGGTGATGATTTTCGGGCTAAAATTTCAGACTTTGGTTTGGTGAAGCATGCCCCAGATAGTGAGAAGTCTGTAGCAACCAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGTGTGGTGTTGATGGAACTTCTGACTGGACTTGTGGCACTTGACGAGAGTCGGCCAGAGGAAAGCCGGTACTTGGCCGAATGGTTTTGGCGAATTAAATCAAGCAAGGAGAAGCTTATGGCTGCTATTGATCCAGTTCTGGAAGCATCTGAAGAAACTTTTGAGAGCATAACCATTGTAGCTGAACTTGCTGGACACTGTACTGCAAGGGAAGCACATCATAGGCCAGATATGGGTCATGCAGTCAATGTCTTGGCAGCATTAGTGGAAAAATGGAAACCAGTTGATGATGAATTAGATTGCTACTCTGGCATTGACTACACAAGACCACTTCCTCAAATGTTGAAGATTTGGAAGGAAGCAGAAAGTGGAGAGTTTAGCTATGCTTCTTGTCTCGAGAACAGCAGAAGCAGTATTGCAGCCAGGCCTTCTGGTTTTGCAGACTCTTTTACCTCTGCTGATGCAAGATGA 2904 0.4225 MRVSWQTMEGVQLEKVVFLLCFGLIITMSYGATNPNDVKVLNDFRKGLENPELLKWPEEGDDPCGPPLWPFVYCSGDRVTQIQAKDLGLRGTLPHNFNQLSELFNLGLQRNNLSGMLPTFSGLSKLKYAFLDYNAFDAIPADFFDGLSSLMVLTLEKNPLNVSSGWSFPMDLEKSVQLTNLSLAFCNLVGPLPDFLGRLPSLTQLSLSGNKLTGAIPATFAQSSIQDLWLNNQEGGGLSGPIDVIASMILLRHVLLHGNQFTGPIPQNIGNLTSLQELNLNSNQLVGLIPESLAHMELEILVLNNNMLMGPIPEFKAANVSYDNNLFCQPEPGLECSPQVAALLDFLDKLNYPSFLISDWVGDEPCTRSTGSWFGLSCNSNSEVSVINLPRHKLNGTLSPSLAKLDSLLEIRLAGNNITGSVPGNFTDLKSLRLLDLSDNNLEPPLPKFHNDPKVVTVGNPLLPNQTGGSPSPMPINNPPSPQNPSHPPSSHESPVPDQSSRSNQSKPNDLKIFKAVGIVAGVAVFAVVALLVVYPFLCCRKNKKASLDAPSSIMVHPRDPSDSDNMVKITVSNATGSLSTKTGTSSQSNISGETQNSHIIEDGNLVISIQVLRKVTNDFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGVISSKALEEFQAEIAVLSKVRHRHLVSLLGYSIDGNERLLVYEYMSLGALSQHLFHWKSLKLEPLSWSQRLAIALDVARGMEYLHSLARQTFIHRDLKSSNILLGDDFRAKISDFGLVKHAPDSEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEESRYLAEWFWRIKSSKEKLMAAIDPVLEASEETFESITIVAELAGHCTAREAHHRPDMGHAVNVLAALVEKWKPVDDELDCYSGIDYTRPLPQMLKIWKEAESGEFSYASCLENSRSSIAARPSGFADSFTSADAR* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1583 967 Gene3D Transferase(Phosphotransferase) domain 1 698 913 - -
Gso12g1583 967 Gene3D Ribonuclease Inhibitor 338 464 IPR032675 -
Gso12g1583 967 MobiDBLite consensus disorder prediction 445 507 - -
Gso12g1583 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Gso12g1583 967 CDD STKc_IRAK 626 896 - -
Gso12g1583 967 Gene3D Phosphorylase Kinase; domain 1 580 697 - -
Gso12g1583 967 MobiDBLite consensus disorder prediction 493 507 - -
Gso12g1583 967 Pfam Protein tyrosine and serine/threonine kinase 623 891 IPR001245 GO:0004672|GO:0006468
Gso12g1583 967 Pfam Leucine Rich Repeat 274 295 IPR001611 GO:0005515
Gso12g1583 967 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Gso12g1583 967 ProSiteProfiles Protein kinase domain profile. 620 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1583 967 SMART LRR_typ_2 100 122 IPR003591 -
Gso12g1583 967 SMART LRR_typ_2 147 170 IPR003591 -
Gso12g1583 967 SMART LRR_typ_2 123 146 IPR003591 -
Gso12g1583 967 SMART LRR_typ_2 429 451 IPR003591 -
Gso12g1583 967 SMART LRR_typ_2 405 428 IPR003591 -
Gso12g1583 967 SMART LRR_typ_2 272 295 IPR003591 -
Gso12g1583 967 SMART LRR_typ_2 199 222 IPR003591 -
Gso12g1583 967 SUPERFAMILY L domain-like 338 448 - -
Gso12g1583 967 SMART serkin_6 620 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1583 967 SUPERFAMILY Protein kinase-like (PK-like) 598 896 IPR011009 -
Gso12g1583 967 Gene3D Ribonuclease Inhibitor 34 333 IPR032675 -
Gso12g1583 967 PANTHER OSJNBA0070M12.3 PROTEIN 16 967 - -
Gso12g1583 967 Pfam Leucine rich repeat N-terminal domain 338 379 IPR013210 -
Gso12g1583 967 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Gso12g1583 967 MobiDBLite consensus disorder prediction 473 492 - -
Gso12g1583 967 PANTHER OSJNBA0070M12.3 PROTEIN 16 967 - -
Gso12g1583 967 SUPERFAMILY L domain-like 33 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1583 Gso-Chr12 39330000 39334017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1583 91 914 Receptor kinase-like Gene Family AT1G55610 31.093 1.57e-86 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gso12g1583 PK_Tyr_Ser-Thr 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1583 - - gmx:100785090 1837.39