Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1581 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGTGGCGCGTTTGGCGCTGCGATTCTCGTAAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATTCAGCATCCCTACATTGTGCAATTTAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATACTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAATCAATCGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAAATACTTTTGGCAGTAGAATACCTGCATTCAAATTTTGTTTTACATCGTGATCTGAAGTGTTCCAACATCTTTCTAACCAAGGATCAAGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTTCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGTTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTTTGCCTCCCTGTTATTCCCCATCTTTGAAAACGCTGATAAAGGGCATGCTGAGAAAAAATCCTGAGCATCGTCCAACAGCATCTGAAATCTTAAAACACCCTTATTTGCTGCCTTATGTTGATCAATATCGTTCATCTTTCTGTACCCCAACAGCTGGTTCTCCTGAAAGGCCAATTTCTGCTGTCCATCATCCTCGAAAAAATAAGCCAGAAAGTCAAAACAGTAGTAGTAGTTTGAGTCCTGAGAAAGATAGTTTCATGTCGAGTGAGAAAAACACTGCAAATGAAGTAAAGAAGTGTGATAGAAAAATCACCGAAATAGACCTGACATCAATTGAGGATGACAGCTCTGAGCAACTCCTGCCCGAGGAAGAGGGAAATGGCTCCAGTAGAGTCAATGCCAAAACAGATGAGAAAGAGCTGACGAAGCAATCTAATAATGTACACCATTCTAATGCTGTATCTAAGCAACCAAAACCAATTAAGAATGTTGTGACAGCTTTAAAAGATGGAAAACTTAGAGAGACAAGTTCTCCAATAAGAGGCAATCGCATAAAGGTTGGTGGTGTATTGACCCATAAAATAAATTCAGAGACAGTGTCCAAATTGCCCAAACCCAATTTTGGTGCTTATGATTTGAAGCCTAATTTGGAGGTGCCAACTACTGCACCTTCTAAAACAACTCCTGATTCTGCAAAAAGAATGCAAGGATTGCATACTTCAAAGCATCAGTTACCAATGATAGAATCCACTCCAAAAACTAAACCTCGACATAATGCGATTCCACCATCTGGTCCAGTCAAACAAGTAGAAGGACGGGAAGTTCCTTCCAAGCCAAGGCAAAAGACTCGTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTGAGGCAGGCTGGGTTTGATGTTCCAAATGCAACAAATAATACTGGAAAGTCAAGTCCAAAGAAAATGGTTTGGGAGCCTAAGATGAGCCATCATCAGCTGACCAACACTCATCTACCACATGTTTCTAGAGAGACTACTAGAGAGCCTTTGAAGACTTTTGAAACCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCACTCTCTATTCAAGGATTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAACCAACACTTCCTGATCATGAGAGTTTAAACCACACTGAAAACGTGGAATCATGTCCATATAGCATTTCATGTGCTTCCTATTTGCATTTTGAGATGTCTGAACAATTATCTGGGGAAACCCCTGTGGTTACACCATGTTTTCAGAATATAACTAGTAATGAGAAAGTAAGTCCCAGTTTAACTCTTGATCACTCAGGCCAAGATGCTGAGGTAATGTTTGCTTCTGATGATAGTTTTTCCATAAATCAAAGGACTGCATCTGCTGGCTCCAGGTGTGATAATTTATCTGTAGATCCCTCTGCTGAAATCACACAAGAAATCAAAGACCCTCAAGATTCAAAGGAAATGTCTTCAGCCAAATCTCTCCAACAGTCGCTCCTCATTTCTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCTTCAAGTAAAGGAAGTAATAGGCTTGATAAAGTTAGCCGGCCAAAACTTATGTGCATCTCCACTGGTGATGACAAATTCATGGTGAGGGAAAGACTGTCATCAGTGGATGAAACTGCTCCTTCGATTATCTCTACTAAAATTTCAAGCCAGAAAGTTTTGCAAGAAGAGAAAGGAATGGTTTTACAGAATCCAGCACCAGAAAGGCCAGCTGTTGGCCATCTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTACCGCGTGGGGAGTGAGCAGCCAGGGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTCGGTAAGTTTATCAACATTGCAAGGGATGATTTAGAAATGAGAAATGTGAGCACCCCTTTGACCCTAAAATCTTCAAATTGCTCTGAAGCTATTGGCTTGAAGTCAAATATTTCTGATAATATGGAAATCAGAAACTTGAGTAGTCCTCCTAACTTAAAATCTTCAAGTTGCACCGACTTGATGAACATCAAATCAAGTTTTTCTGATCATCTTCTTGTTAGGAAACAAGATGTGAAAAACACTGATTCTCTTGTTTCAAAATCTGATTCCTCCGAGTATACCAAACATAACACTCCTACAGCTGCAGAGGAAACACCCCCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAAGCACTTGAAGGTCTGTTGGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCCTTTGGAAAAGATAAAGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTAAAAGGATTGATGATCGAGGAAAGTGGGGGACGCAGTTAA 3135 0.4144 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVQFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSIGVYFPEEKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEILKHPYLLPYVDQYRSSFCTPTAGSPERPISAVHHPRKNKPESQNSSSSLSPEKDSFMSSEKNTANEVKKCDRKITEIDLTSIEDDSSEQLLPEEEGNGSSRVNAKTDEKELTKQSNNVHHSNAVSKQPKPIKNVVTALKDGKLRETSSPIRGNRIKVGGVLTHKINSETVSKLPKPNFGAYDLKPNLEVPTTAPSKTTPDSAKRMQGLHTSKHQLPMIESTPKTKPRHNAIPPSGPVKQVEGREVPSKPRQKTRPSLLKPPSFPGHVRQAGFDVPNATNNTGKSSPKKMVWEPKMSHHQLTNTHLPHVSRETTREPLKTFETSSKGMQTDSSNSVSSSLSIQGFELSDFATTFIDLSEPTLPDHESLNHTENVESCPYSISCASYLHFEMSEQLSGETPVVTPCFQNITSNEKVSPSLTLDHSGQDAEVMFASDDSFSINQRTASAGSRCDNLSVDPSAEITQEIKDPQDSKEMSSAKSLQQSLLISGEKSVCEEFGPSSKGSNRLDKVSRPKLMCISTGDDKFMVRERLSSVDETAPSIISTKISSQKVLQEEKGMVLQNPAPERPAVGHLPPAFDDVIHVIRHSSYRVGSEQPGKESVEMGVQNVDVGKFINIARDDLEMRNVSTPLTLKSSNCSEAIGLKSNISDNMEIRNLSSPPNLKSSSCTDLMNIKSSFSDHLLVRKQDVKNTDSLVSKSDSSEYTKHNTPTAAEETPPKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIEESGGRS* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1581 1044 MobiDBLite consensus disorder prediction 948 970 - -
Gso12g1581 1044 MobiDBLite consensus disorder prediction 297 319 - -
Gso12g1581 1044 MobiDBLite consensus disorder prediction 440 543 - -
Gso12g1581 1044 MobiDBLite consensus disorder prediction 335 385 - -
Gso12g1581 1044 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Gso12g1581 1044 MobiDBLite consensus disorder prediction 276 323 - -
Gso12g1581 1044 SUPERFAMILY Protein kinase-like (PK-like) 4 307 IPR011009 -
Gso12g1581 1044 CDD STKc_Nek 7 262 - -
Gso12g1581 1044 MobiDBLite consensus disorder prediction 948 966 - -
Gso12g1581 1044 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1581 1044 Gene3D Transferase(Phosphotransferase) domain 1 90 344 - -
Gso12g1581 1044 MobiDBLite consensus disorder prediction 356 371 - -
Gso12g1581 1044 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1581 1044 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Gso12g1581 1044 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1028 - -
Gso12g1581 1044 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Gso12g1581 1044 MobiDBLite consensus disorder prediction 446 461 - -
Gso12g1581 1044 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1028 - -
Gso12g1581 1044 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1581 Gso-Chr12 39299294 39307015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1581 14 262 MAP Kinase Kinase Kinase AT1G53570 32.677 1.88e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gso12g1581 Pkinase 7.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1581 K08857 - gmx:100818943 2043.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1581 12 39299294 39307015 Gso11g3267 11 48495472 48502941 GST
Gso12g1581 12 39299294 39307015 Gso12g0766 12 7714350 7720952 PCT
Gso12g1581 12 39299294 39307015 Gso11g1346 11 15174279 15180993 PCT
Gso12g0766 12 7714350 7720952 Gso12g1581 12 39299294 39307015 PCT
Gso11g1346 11 15174279 15180993 Gso12g1581 12 39299294 39307015 PCT