Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1567 ATGGATGATCTCCCACCAGGTTTTCGATTCTACCCAACAGAAGAAGAATTAGTTTTCTTCTATCTACACAACCAGCTAGAAGGCCAAATACACGACACAAGCAGAGTCATTCCAGTCATTGACATCAATGGCGTAGAGCCATGGAACCTTCCATCACTTGCAGGGGAGCTTTGTCGTGGAGACACGGAGCAATGGTTTTTCTTTTCACCGAGACAAGAGAGAGAGGCCAGAGGAGGCAGACCCAACAGAACCACAGCAAGTGGTTATTGGAAGGCCACTGGTTCCCCTGGCCATGTTTACTCTTCTGACAACAAAGTCATTGGGATGAAGAAAACCATGGTCTTTTACAAAGGGAAAGCTCCCACCGGAAGGAAAACCAAATGGAAGATGCATGAGTATAAAGCCATTGAACACTCTGATCAATCCAACACTGCCCCTCCAAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTGATATCGGGAAGCTTTCGATCGTTTGATCGACGCCCACTGGATATGCCAAGAGTTGAGCTACGAGTTGTTGATGGGGACAGAGGTGCTGCTTCAACAAGTGCTCAAGCTCAACAGAGAAGTTCTTCTCATACTTCCCACTCTGGTGGTGATGCTCATGTCACAGATGCTGGAGCAGGGTCAAGTGGAACAAATTGGAATGCAAGTAATAGGGTTGAGGAACCACTTTGGGAATGGGAACAACTTGATTGGCCATGA 735 0.4694 MDDLPPGFRFYPTEEELVFFYLHNQLEGQIHDTSRVIPVIDINGVEPWNLPSLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKAIEHSDQSNTAPPKLRHEFSLCRVYVISGSFRSFDRRPLDMPRVELRVVDGDRGAASTSAQAQQRSSSHTSHSGGDAHVTDAGAGSSGTNWNASNRVEEPLWEWEQLDWP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1567 244 MobiDBLite consensus disorder prediction 188 233 - -
Gso12g1567 244 MobiDBLite consensus disorder prediction 190 209 - -
Gso12g1567 244 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Gso12g1567 244 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Gso12g1567 244 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Gso12g1567 244 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Gso12g1567 244 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 244 - -
Gso12g1567 244 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1567 Gso-Chr12 39145048 39146820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1567 2 244 NAC Transcription Factor Family AT5G22380 59.836 1.42e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso12g1567 NAM 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1567 - - gmx:100780264 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1567 12 39145048 39146820 Gso11g3282 11 48652348 48654997 GST
Gso12g1567 12 39145048 39146820 Gso12g0743 12 7493536 7495195 PCT
Gso12g1567 12 39145048 39146820 Gso11g1373 11 15638158 15639835 PCT
Gso12g0743 12 7493536 7495195 Gso12g1567 12 39145048 39146820 PCT
Gso11g1373 11 15638158 15639835 Gso12g1567 12 39145048 39146820 PCT