Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1554 ATGGCGAGCCACAGAATAGGAGAACTTGGTTTGTCTGAGTCAGGACCTTCAAGTCACCACATCCCTTATGGAGTGCTTCACGGAATTAACACTCCTGCATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGAGGGCAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAGCAAACCCCAAGAGTTGGTTCAAAGTCAGGAGGAGAAAGCACTGATTCAGGTCTCTCTAGCAAAACTGAGCCCCCCTTTGAGGCAGAATCTCCCATAAGTAAAAAGGCATCTTCTTCAGATCATCATCAGGCTTTTGATCAGCAGCATCTGCAGCATAGACAGCAACTTCAACAGGAGATGGCAAGTGATGCCCCAAGAGCAGCCTCTTCACAGAATCAATCAGCAGCCAAATCACCTCAAGAAAAGAGAAAGGGAGCTGGTTCTACATCAGACAAACCACTTGATGCAAAGACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTGAGGAAAAAGGCTTATGTGCAGCAACTAGAGTCAAGTAGATTAAAGCTTAACCAGATAGAACAAGAACTTCAAAGAGCACGCCCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAAGTACTGTAAGCTCGGGAGCCGCAATGTTTGACATGGAATATGCAAGATGGTTAGAAGAAGATCACAGACTAATGGGGGAGCTGAGGAACGGGTTGCAAGCACCGTTATCAGACAGTGATATGAGAGTGATGGTGGATGGATATCTTTCTCACTATGATGAGATTTTCAGGCTCAAGGGTGTGGCTGCTAAATCTGATGTCTTCCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGTTTCCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCATGATGCTGATTCAGCAGTTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCCTGAAGCATTCCTCACAGCAAGCAGAAGAAGCACTCTCTCAGGGACTTGAGCAGTTGCAGCAGTCACTTGTGGACACCATAGCTGGAGGCCCAGTGGTTGATGGTGTTCAACAAATGGTCGTTGCCATGAGCAAGCTTGCCAATCTTGAAGGTTTTGTTCGCCAGGCTGATAATTTGAGGCAGCAAACTCTTCATCAGCTATGTCGATTACTCACAGTTCGTCAAGCAGCACGATGCTTTATTGTTATTGGAGAGTACTATGGACGTCTTCGTGCCCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGACCTTGATCAACGACGATAACTCATGCCAAACAACTACGGAAATGCAAATAGTCCAACATTCTCAGAATTATTTCTCAAGTTTCTGA 1464 0.4604 MASHRIGELGLSESGPSSHHIPYGVLHGINTPASSLINQGSAFDFGELEEAIVLHGVKGRNDEGKASLFTARPAATLEMFPSWPMRFQQTPRVGSKSGGESTDSGLSSKTEPPFEAESPISKKASSSDHHQAFDQQHLQHRQQLQQEMASDAPRAASSQNQSAAKSPQEKRKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLNQIEQELQRARPQGLFVDCGGVGSTVSSGAAMFDMEYARWLEEDHRLMGELRNGLQAPLSDSDMRVMVDGYLSHYDEIFRLKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLIMMLIQQLEPLAEQQIMGMYGLKHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRETLINDDNSCQTTTEMQIVQHSQNYFSSF* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1554 487 PANTHER TRANSCRIPTION FACTOR TGA9 64 466 - -
Gso12g1554 487 PANTHER TRANSCRIPTION FACTOR TGA9 64 466 - -
Gso12g1554 487 Coils Coil 204 228 - -
Gso12g1554 487 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Gso12g1554 487 SMART brlzneu 181 246 IPR004827 GO:0003700|GO:0006355
Gso12g1554 487 MobiDBLite consensus disorder prediction 172 186 - -
Gso12g1554 487 MobiDBLite consensus disorder prediction 80 186 - -
Gso12g1554 487 MobiDBLite consensus disorder prediction 137 167 - -
Gso12g1554 487 Gene3D - 184 232 - -
Gso12g1554 487 MobiDBLite consensus disorder prediction 122 136 - -
Gso12g1554 487 ProSiteProfiles DOG1 domain profile. 248 456 IPR025422 GO:0006351|GO:0043565
Gso12g1554 487 Pfam Seed dormancy control 266 339 IPR025422 GO:0006351|GO:0043565
Gso12g1554 487 CDD bZIP_HBP1b-like 185 235 - -
Gso12g1554 487 MobiDBLite consensus disorder prediction 88 111 - -
Gso12g1554 487 SUPERFAMILY Leucine zipper domain 185 227 IPR046347 GO:0003700|GO:0006355
Gso12g1554 487 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Gso12g1554 487 Pfam bZIP transcription factor 184 216 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1554 Gso-Chr12 39016202 39024646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1554 126 487 bZIP Transcription Factor Family AT1G08320 68.044 6.78e-179 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso12g1554 DOG1 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1554 K14431 - gmx:100775461 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1554 12 39016202 39024646 Gso11g3294 11 48743841 48751788 GST
Gso12g1554 12 39016202 39024646 Gso12g0721 12 7296750 7305286 PCT
Gso12g1554 12 39016202 39024646 Gso11g1389 11 15881396 15889681 PCT
Gso12g0721 12 7296750 7305286 Gso12g1554 12 39016202 39024646 PCT
Gso11g1389 11 15881396 15889681 Gso12g1554 12 39016202 39024646 PCT