Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1553 ATGTCTCTCCAACAACCAAATCAAGAGGTGCCATTGCAAGAACCAGAAGCCACATTTTCTCAACTAAGCAAACAAAACTCAATACTCTCACTCACCCTTGATGAGTTCTATTGCAAGAATGGAAAGAGCTTAGGATCCATGAACATGGATGAATTCCTTTCTAGCATTTGGAACTCTGATGACAACAACCAAGTTAACCCATCACTACCCACCCTTGATGAAGCTGCAAAGGGTAAAAGTGTAGTAGCAACAGAACCCACCACCATTTCCCAGCCATTATCTGTCCCTCCCCCAATTTGCAAGAAAACTGTGGATGAAATTTGGTCTCAGATCCACAAAAGCCAACCACACTACAATGAAGCTAACAATAGCCTTGCCAGGAATGAGCCACTACTCAAAAGGCAGCAAACACTTGGGGAAATGACTTTGGAGGATTTCCTAGTAAAAGCTGGGGTGGTACAAGAATCATCATCACTATTCAAGTCTTCATTACTATATCAAAATCAGATTGGTAACATTGCAAGTAATGGGCCATTGAGTGCAAGTTATAGGTTCAGGCATGTAATAGGGACAGGATCTAGTGTGTCTTGTAATGGGCTTGAAACACAAAACATGTTGGCACAGAATAACAACTTAGTTATAAAGGATGTCACTACAAATGGTGCTGTGGAGAAATGTCCAAGCTTAGGAGAATCAAGTGGGAAGGGTAATAGGAAGAGGATCATTGATGGCCCTCCTGAAGTGGTAGTAGAGAGAAGGCAGCGCAGAATGTTGAAGAATCGAGAATCGGCGGCACGTTCTCGAGCAAGAAGACAGGCATATACGGTAGAGCTTGAAGCAGAGCTGAATCTGCTAAAAGAAGAGAACGAAAAGCTCAAACAAACTCTGGCCGATGCTGAACGCAAGAGAAAACAAGAGATTTCTCAGAGAAAGCACACAACAATGGCTCAAAAGAGGACAGAAAAATTGAGGTCAATGAAGAGGCCTCTAAGCGCATCCTGGTGA 1005 0.4299 MSLQQPNQEVPLQEPEATFSQLSKQNSILSLTLDEFYCKNGKSLGSMNMDEFLSSIWNSDDNNQVNPSLPTLDEAAKGKSVVATEPTTISQPLSVPPPICKKTVDEIWSQIHKSQPHYNEANNSLARNEPLLKRQQTLGEMTLEDFLVKAGVVQESSSLFKSSLLYQNQIGNIASNGPLSASYRFRHVIGTGSSVSCNGLETQNMLAQNNNLVIKDVTTNGAVEKCPSLGESSGKGNRKRIIDGPPEVVVERRQRRMLKNRESAARSRARRQAYTVELEAELNLLKEENEKLKQTLADAERKRKQEISQRKHTTMAQKRTEKLRSMKRPLSASW* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1553 334 MobiDBLite consensus disorder prediction 296 326 - -
Gso12g1553 334 PANTHER BZIP TRANSCRIPTION FACTOR 2 334 - -
Gso12g1553 334 Gene3D - 250 304 - -
Gso12g1553 334 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 2 334 IPR043452 GO:0003700|GO:0045893
Gso12g1553 334 Coils Coil 271 309 - -
Gso12g1553 334 SMART brlzneu 248 312 IPR004827 GO:0003700|GO:0006355
Gso12g1553 334 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 250 302 IPR004827 GO:0003700|GO:0006355
Gso12g1553 334 Pfam bZIP transcription factor 252 302 IPR004827 GO:0003700|GO:0006355
Gso12g1553 334 MobiDBLite consensus disorder prediction 296 334 - -
Gso12g1553 334 SUPERFAMILY Leucine zipper domain 252 301 IPR046347 GO:0003700|GO:0006355
Gso12g1553 334 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 255 270 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1553 Gso-Chr12 39000912 39003228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1553 5 334 bZIP Transcription Factor Family AT3G44460 42.939 2.00e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Gso12g1553 bZIP_1 2e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1553 K14432 - gmx:100820370 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1553 12 39000912 39003228 Gso11g3295 11 48753331 48755631 GST