Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1548 ATGAGTTTTAGGGAGTGCAATAATGTAGAAAACAAGAATCTGTGTCTTCAAACCCCAACTTTTATTGAGTGGCTCAAACCATCATCATCTTCCTCTCTAACTAGTTTAATTTCTTCATCACCTCCTTCTTATTCCTTGACTCAGCATGAACAACTTGCCCAAGAAACCATCCAGTTTTTGCCCTTCAAGGAAGATCAGCATATAAGAGTGCAAAAGGAAGGTTTTGAAGTAAAGGAAGAGAAGAAGGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTAACACAGGAGGCCATGACCCTGATGATGATAATGATCATGATGCTGATGATGAGAAGAAGGTTTTCCATGTTAAGGAAGAAGAAGAACCCTTGAAGAAAGGCTTCCAGGGTAATTGTTCTTTCAATCAGGAGAGAAGATTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCACGGGTCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCAAAGCCCTTGAAGGACTTCAGAACCCTCCAAACCCACTACAAAAGAAAGCACGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTTAAAGATCATATTAGATCCTTTGGAAAAGGTCACTCTCCACATCCTTCTCTTGAAGGCTTCGTCGAGGATGAGAAGGAATGTGTTACCGGTTCTGATGATGAAGATGATGTTGCTCATACATGA 966 0.4234 MSFRECNNVENKNLCLQTPTFIEWLKPSSSSSLTSLISSSPPSYSLTQHEQLAQETIQFLPFKEDQHIRVQKEGFEVKEEKKVEQVTVALHIGLPNTGGHDPDDDNDHDADDEKKVFHVKEEEEPLKKGFQGNCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECVTGSDDEDDVAHT* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1548 321 Pfam Zinc finger, C2H2 type 157 176 IPR013087 -
Gso12g1548 321 Gene3D Classic Zinc Finger 156 179 - -
Gso12g1548 321 PANTHER ZINC FINGER PROTEIN WIP2 1 318 IPR043584 GO:0003700|GO:0010468
Gso12g1548 321 SUPERFAMILY beta-beta-alpha zinc fingers 143 180 IPR036236 -
Gso12g1548 321 ProSitePatterns Zinc finger C2H2 type domain signature. 159 179 IPR013087 -
Gso12g1548 321 SUPERFAMILY beta-beta-alpha zinc fingers 227 261 IPR036236 -
Gso12g1548 321 SMART c2h2final6 241 261 IPR013087 -
Gso12g1548 321 SMART c2h2final6 157 179 IPR013087 -
Gso12g1548 321 SMART c2h2final6 204 236 IPR013087 -
Gso12g1548 321 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 318 - -
Gso12g1548 321 Gene3D Classic Zinc Finger 197 289 - -
Gso12g1548 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 157 184 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1548 Gso-Chr12 38946113 38950268 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1548 7 310 C2H2 Transcription Factor Family AT1G08290 57.227 1.10e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g1548 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1548 - - gmx:100819306 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1548 12 38946113 38950268 Gso11g3297 11 48778062 48781894 GST
Gso12g1548 12 38946113 38950268 Gso12g0718 12 7234875 7238676 PCT
Gso12g1548 12 38946113 38950268 Gso11g1391 11 15944795 15948581 PCT
Gso12g0718 12 7234875 7238676 Gso12g1548 12 38946113 38950268 PCT
Gso11g1391 11 15944795 15948581 Gso12g1548 12 38946113 38950268 PCT