Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1547 ATGGCGGAAGAACACAGATGCCAGGCACCGCGCTTCTGCGCCAACAATTGCGGTTTCTTTGGCAGCCCTGCCACGCAGAATATGTGCTCCAAGTGCTACCGCGATTTCCAGCTCAAGGAGCAGCAATCTTCCAACGCCAAGATGGTTCTCAATCAGTCGCTGGTTCCTTCACCGCCACCGGCGGTGATTTCTCAGCCGTCGTCTTCTTCTTCGGCCGCGGTAGATCCGTCATCGGCGGTGGTTGATGACGCGCCACGCGAGTCGGAGGAGGTTAAGGCGCCGCAGCAGAACCGGTGTATGACGTGCAGGCGGCGCGTGGGGCTCACAGGGTTCAAGTGTCGGTGCGGGATGATGCTGTGCGGGACCCACCGTTACCCGGAGCAGCACGCGTGCGAGTTCGACTTCAAGGGGATGGGGAGAGAGCAGATCGCGAAGGCGAATCCGGTGGTGAAGGGCGAGAAGCTCGACAAGATCTGA 477 0.6038 MAEEHRCQAPRFCANNCGFFGSPATQNMCSKCYRDFQLKEQQSSNAKMVLNQSLVPSPPPAVISQPSSSSSAAVDPSSAVVDDAPRESEEVKAPQQNRCMTCRRRVGLTGFKCRCGMMLCGTHRYPEQHACEFDFKGMGREQIAKANPVVKGEKLDKI* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1547 158 Gene3D - 1 59 - -
Gso12g1547 158 Gene3D - 67 154 IPR035896 -
Gso12g1547 158 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 158 - -
Gso12g1547 158 MobiDBLite consensus disorder prediction 49 93 - -
Gso12g1547 158 Pfam AN1-like Zinc finger 99 135 IPR000058 GO:0008270
Gso12g1547 158 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 158 - -
Gso12g1547 158 Pfam A20-like zinc finger 13 34 IPR002653 GO:0003677|GO:0008270
Gso12g1547 158 ProSiteProfiles Zinc finger AN1-type profile. 93 139 IPR000058 GO:0008270
Gso12g1547 158 SMART AN1_Zf_4 99 136 IPR000058 GO:0008270
Gso12g1547 158 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Gso12g1547 158 SUPERFAMILY AN1-like Zinc finger 86 153 IPR035896 -
Gso12g1547 158 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Gso12g1547 158 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1547 Gso-Chr12 38926400 38927556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1547 1 158 C2H2 Transcription Factor Family AT3G52800 47.126 1.05e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1547 - - gmx:100807363 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1547 12 38926400 38927556 Gso11g3298 11 48794796 48795691 GST