Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1546 ATGTATAGCAATTTCAAGGAGCAAGCCATAGAGTACGTGAAGCAGGCCGTGCAGGAAGACAATGCGGGAAACTACGCGAAAGCGTTCCCTCTCTACATGAACGCCTTGGAGTACTTCAAGACGCATCTCAAGTACGAGAAGAACCCTAAGATCAAGGAAGCCATCACGCAGAAATTCACCGAGTACCTGCGCCGGGCCGAGGAGATTCGGGCCGTGCTCGACGATGGCGGCCCCGGCCCAGCCTCCAACGGGGACGCGGCGGTGGCTGCAAGGCCCAAGACCAAGCCGAAGGACGGGGAAAGCGGTGGCGGTGGTGACGGCGAGGACCCCGAGCAGGCCAAGCTCCGGGCCGGGCTCAACTCGGCCATCATAAGGGAAAAGCCCAACGTGAAGTGGAACGACGTCGCAGGGTTGGAGAGCGCCAAACAGGCCTTGCAGGAGGCTGTGATTTTGCCTGTGAAGTTCCCTCAGTTCTTTACTGGGAAAAGACGACCCTGGAGAGCTTTCTTGTTGTATGGACCTCCTGGAACGGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAAGCTGAGTCCACGTTTTTCAGTGTTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCGAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTTATTGACGAAATTGATTCCCTGTGTGGTCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAGCTTCTGGTGCAGATGCAGGGTGTAGGACACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACGCCCTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGCATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCCCATAACTTGACTGAAAGCGATTTTGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGACATATCTGTCTGTGTAAAGGATGTGTTATTTGAACCTGTTCGCAAAACCCAAGATGCAATGTTCTTCTTGAAGAATCCCGAGGGTATGTGGATCCCGTGTGGACCAAAGCAACAGGGTGCAGTACAAACCTCAATGCAAGAGCTTGCTGCAAAAGGACTTGCTTCTAAGATCCTTCCGCCCCCTATTACGAGGACAGATTTTGAGAAGGTACTCGCTAGACAAAGGCCTACAGTAAGCAAAGCCGACCTTGATGTTCACGAGAGATTCACAAAGGAATTTGGAGAGGAAGGTTAA 1311 0.4996 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVAARPKTKPKDGESGGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEAESTFFSVSSSDLVSKWMGESEKLVSNLFEMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFLKNPEGMWIPCGPKQQGAVQTSMQELAAKGLASKILPPPITRTDFEKVLARQRPTVSKADLDVHERFTKEFGEEG* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1546 436 SMART AAA_5 165 301 IPR003593 -
Gso12g1546 436 MobiDBLite consensus disorder prediction 73 112 - -
Gso12g1546 436 Gene3D - 301 416 - -
Gso12g1546 436 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 436 - -
Gso12g1546 436 SMART smart 2 79 IPR007330 -
Gso12g1546 436 Gene3D - 128 424 IPR027417 -
Gso12g1546 436 SUPERFAMILY MIT domain 2 81 IPR036181 -
Gso12g1546 436 MobiDBLite consensus disorder prediction 91 112 - -
Gso12g1546 436 PANTHER AAA DOMAIN-CONTAINING 1 436 - -
Gso12g1546 436 Pfam ATPase family associated with various cellular activities (AAA) 170 299 IPR003959 GO:0005524|GO:0016887
Gso12g1546 436 CDD AAA 136 299 - -
Gso12g1546 436 ProSitePatterns AAA-protein family signature. 271 290 IPR003960 GO:0005524|GO:0016887
Gso12g1546 436 Pfam MIT (microtubule interacting and transport) domain 7 70 IPR007330 -
Gso12g1546 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 432 IPR027417 -
Gso12g1546 436 Gene3D - 6 75 - -
Gso12g1546 436 Pfam Vps4 C terminal oligomerisation domain 369 433 IPR015415 -
Gso12g1546 436 CDD MIT_VPS4 4 77 IPR045253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1546 Gso-Chr12 38909323 38916290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1546 164 357 Calmodulin-binding Proteins AT3G56690 37.245 4.90e-35 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1546 K12196 - gmx:100806836 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1546 12 38909323 38916290 Gso11g3299 11 48805220 48809382 GST
Gso12g1546 12 38909323 38916290 Gso12g0712 12 7195427 7199646 PCT
Gso12g1546 12 38909323 38916290 Gso11g1397 11 16000398 16007872 PCT
Gso12g0712 12 7195427 7199646 Gso12g1546 12 38909323 38916290 PCT
Gso11g1397 11 16000398 16007872 Gso12g1546 12 38909323 38916290 PCT