Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1538 ATGAAGGTCGTAGCTGCATACTTGCTCGCAGTGTTGGGAGGGAATCCTTCCCCTTCTGCCGATGACATCAAACACATCCTCGGCGCAGTTGGAGCTGAGGCTGAGAATGAGTTGATTGAGTTGCTCTTGACTGAAGTCAAGGGAAAAGACTTCAATGAGCTAATTGCTAGTGGAAGTGAAAAGATGTCTGCAGTGTCTGGTGGCGGTGCAGCGGTTGCCGTTGCTGCTGCACCAGCTGGAGGTGCTGCTGCACCTGCTGCCGAAGCAAAGGAAGAAAAGAAAGTAGAAGAGAAGGAGGAGTCTGATGATGATATGGGTTTCAGTTTGTTCGACTAA 336 0.5 MKVVAAYLLAVLGGNPSPSADDIKHILGAVGAEAENELIELLLTEVKGKDFNELIASGSEKMSAVSGGGAAVAVAAAPAGGAAAPAAEAKEEKKVEEKEESDDDMGFSLFD* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1538 111 CDD Ribosomal_P2 1 111 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gso12g1538 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 111 IPR044076 GO:0002182|GO:0003735|GO:0022625
Gso12g1538 111 MobiDBLite consensus disorder prediction 87 101 - -
Gso12g1538 111 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 111 - -
Gso12g1538 111 MobiDBLite consensus disorder prediction 82 111 - -
Gso12g1538 111 Pfam 60s Acidic ribosomal protein 17 110 - -
Gso12g1538 111 Hamap 50S ribosomal protein L12 [rpl12]. 2 111 IPR027534 GO:0003735|GO:0005840|GO:0006414
Gso12g1538 111 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1538 Gso-Chr12 38824177 38825700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1538 1 111 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 63.964 1.20e-29 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1538 K02943 - gmx:100306264 137.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1538 12 38824177 38825700 Gso11g3307 11 48867927 48869453 GST