Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1536 ATGGACCCATGGCTCGACGATCTAACCTACGACCTCCAGAGTCTTAGCTTCGCCTCCACCGCCACCGCGGACATCAAGCGGAGCACCAGCTTCGGCTCCGAAACCACCACTCTCACCGCCTCCTCCTCCGCCCACCTCCCCGCCAACAGCAAGCCCCACGCTCCCTCCTCCGACCCACGCTGGGCCGCCATCCACCGGATCCGATCGGAGTCCCCCAGCCGCCGCATCCTCCCCTCCGACCTCCGCTTCTCCCGCCGTCTCGGCTCCGGCGACATCAGCTCCGTCTACCTCGCCGAACTCAACGACGGGTCCCTCTCCGTGATGTTCGCCGCCAAGGTGATGGACAAGAAGGAGCTGGCCAGCCGCAGCAAGGAAGGAAGAGCCAAGACCGAGAGGGAAATCCTCGAATCCCTCGACCACCCCTTCCTCCCCACCCTCTACGCCACCATCGACGCCGCCAAATGGCTCTGCCTCCTCACCGAGTTCTGCCCCGGCGGCGACCTCCACATCCTCCGCCAACGCCAGCCCCACAAACGCTTCCCTGAACCCGCCGTCAGGTTCTATGCGTCAGAGGTGCTAGTGGCACTTGAATACCTCCACATGATGGGGATAGTGTACCGTGATCTGAAGCCGGAGAACGTGTTAGTTCGATCAGACGGCCACATCATGCTCACTGATTTTGACCTCTCGTTAAAATGTGATGATTCCACATCAACGCCCCAGATCATCTTGGATCAGAAAAACACCCCACACAAGGACCCCCACGTGGATCCCTCGCAGTCTCAGTTCACCTCGTCTTCCTGCATACTACCCAGCTGTATAGTCCCCGCCGTGTCGTGTTTCCACCCAAAACGCAAGCGCAAGAAGAAGCAGGCCCAACATAATGGGCCTGAGTTTGTGGCCGAGCCCATTGATGTTCGCTCCATGTCCTTCGTTGGGACCCACGAGTACCTGGCTCCGGAAATCGTGTCCGGGGAGGGCCACGGTAGTGCCGTGGACTGGTGGACTTTGGGCATATTCATATTTGAATTGTTCTATGGTGTCACGCCCTTTAGGGGAATGGACAACGAGCTAACCCTAGCAAACATTGTGGCTCGAGCCTTGGAGTTCCCTAAGGAACCCTCCGTGCCACCCACGGCAAAGGACCTCATCTCTCAGCTATTGGTTAAGGACCCTTCGAGGAGGCTAGGCTCAACAATGGGTGCTTCCTCTATCAAGCACCACCCCTTTTTCCAAGGTGTTAATTGGGCATTGCTAAGGTGTACTCCTCCACCCTTTGTGCCCCCACATTATATTAAAGAAGCTGTATCATCTCATCATGAAATTGAAACTTGTCCGCAGACTCCCATTGATTATTATTGA 1362 0.5712 MDPWLDDLTYDLQSLSFASTATADIKRSTSFGSETTTLTASSSAHLPANSKPHAPSSDPRWAAIHRIRSESPSRRILPSDLRFSRRLGSGDISSVYLAELNDGSLSVMFAAKVMDKKELASRSKEGRAKTEREILESLDHPFLPTLYATIDAAKWLCLLTEFCPGGDLHILRQRQPHKRFPEPAVRFYASEVLVALEYLHMMGIVYRDLKPENVLVRSDGHIMLTDFDLSLKCDDSTSTPQIILDQKNTPHKDPHVDPSQSQFTSSSCILPSCIVPAVSCFHPKRKRKKKQAQHNGPEFVAEPIDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFIFELFYGVTPFRGMDNELTLANIVARALEFPKEPSVPPTAKDLISQLLVKDPSRRLGSTMGASSIKHHPFFQGVNWALLRCTPPPFVPPHYIKEAVSSHHEIETCPQTPIDYY* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1536 453 Gene3D Transferase(Phosphotransferase) domain 1 307 429 - -
Gso12g1536 453 PANTHER OS11G0150700 PROTEIN 1 453 - -
Gso12g1536 453 SMART serkin_6 81 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1536 453 ProSiteProfiles Protein kinase domain profile. 81 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1536 453 SUPERFAMILY Protein kinase-like (PK-like) 56 438 IPR011009 -
Gso12g1536 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Gso12g1536 453 Pfam Protein kinase domain 308 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1536 453 Pfam Protein kinase domain 84 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1536 453 Gene3D Phosphorylase Kinase; domain 1 80 166 - -
Gso12g1536 453 CDD STKc_phototropin_like 79 429 - -
Gso12g1536 453 PANTHER FLIPPASE KINASE 1-RELATED 1 453 - -
Gso12g1536 453 MobiDBLite consensus disorder prediction 40 60 - -
Gso12g1536 453 Gene3D Transferase(Phosphotransferase) domain 1 167 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1536 Gso-Chr12 38809493 38813499 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1536 1 453 AGC Kinase Gene Family AT3G44610 67.019 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso12g1536 Pkinase 2.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1536 K08286 - gmx:100801347 917.146