Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1534 ATGGATGTTAAAATGAACAAAGTAGAGAGTGAATCTCCTTATTATAATTATTCCTCTTCATCATCATCATCCACTTCTTCTCAAAGCCAGCTCTCATTGGCATTTGCATGCAATCCGAATTTTTCACCGGACCATTCATCACTGCATGCCGAAACTTGGAAGGCAGGAGTGTTGATCTCTCACAAGAGGAAAGCGGGGAGAAAGAAGTTTCGGGAGACGCGTCACCCGGTGTACAGAGGGGTTCGGCAGAGGAACGGTAACAGGTGGGTGTGTGAAGTTCGTGAACCGAACAAGAAGTCAAGGATATGGCTCGGGACATACCCTACGCCAGAAATGGCAGCTAGGGCACATGACGTGGCTGTCCTAGCACTTAAGGGCACCTCTGCACTGTTCAATTTCCCTGATTCGGTTTCTCTTCTTCCGGTTGCAAAGTCATCTTCTGCTGCTGATGTAAGAGTTGCTGCTTCAAAAGTTTCAACGATTTTTTGCCCTTCTTATTCCTCCGTAACATTATCTAGTTCTTCACCATCTAATTCCCGGGTCAAGACTAAGCCTTGTTTGGTTGATGATTTTGTTAAGACTGAGAATAACGTTGATGAGGCCAAATCAGTGTTTTTTGATGAAGAGGCGTTCTATAATATGCCACTTTTGTTAGATAGTATGGCAGAGGGTCTTCTCATTACTCCACCGTCTATGAAGAGAGCATTTGATTGGGACCAGGTTGACTGTGAAACAGATCTCACTCTCTGGACAGATTAA 759 0.4453 MDVKMNKVESESPYYNYSSSSSSSTSSQSQLSLAFACNPNFSPDHSSLHAETWKAGVLISHKRKAGRKKFRETRHPVYRGVRQRNGNRWVCEVREPNKKSRIWLGTYPTPEMAARAHDVAVLALKGTSALFNFPDSVSLLPVAKSSSAADVRVAASKVSTIFCPSYSSVTLSSSSPSNSRVKTKPCLVDDFVKTENNVDEAKSVFFDEEAFYNMPLLLDSMAEGLLITPPSMKRAFDWDQVDCETDLTLWTD* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1534 252 ProSiteProfiles AP2/ERF domain profile. 77 134 IPR001471 GO:0003700|GO:0006355
Gso12g1534 252 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 251 IPR045277 GO:0003700
Gso12g1534 252 Gene3D AP2/ERF domain 77 135 IPR036955 GO:0003700|GO:0006355
Gso12g1534 252 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Gso12g1534 252 PRINTS Ethylene responsive element binding protein signature 100 116 IPR001471 GO:0003700|GO:0006355
Gso12g1534 252 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 251 - -
Gso12g1534 252 SUPERFAMILY DNA-binding domain 77 136 IPR016177 GO:0003677
Gso12g1534 252 CDD AP2 78 136 IPR001471 GO:0003700|GO:0006355
Gso12g1534 252 Pfam AP2 domain 76 126 IPR001471 GO:0003700|GO:0006355
Gso12g1534 252 MobiDBLite consensus disorder prediction 1 23 - -
Gso12g1534 252 SMART rav1_2 77 140 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1534 Gso-Chr12 38786338 38787111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1534 62 251 AP2-EREBP Transcription Factor Family AT4G25470 46.316 4.44e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso12g1534 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1534 - - gmx:100816109 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1534 12 38786338 38787111 Gso11g3311 11 48895635 48896386 GST
Gso12g1534 12 38786338 38787111 Gso12g0701 12 7007597 7008441 PCT
Gso12g1534 12 38786338 38787111 Gso11g1416 11 16304291 16305722 PCT
Gso12g0701 12 7007597 7008441 Gso12g1534 12 38786338 38787111 PCT
Gso11g1416 11 16304291 16305722 Gso12g1534 12 38786338 38787111 PCT