Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1523 ATGGAGTTTTGGGGTGCCGAGGTTAAGGTTGGTGAGTCTGTTAAGGTAGATCCAGCCGAATTCGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAAGACAAATCAAATGAACCAGTTGTTCTCTACTTGAAAGTTGGTCAACAGAAATTTGTCTTGGGAACCCTTTCCAGGGAGAAAATTCCTCAAATACCTCTGGAATTGGTTTTGGAAAAGGAGTTTGAGCTTTCCCACAACTCAAAGAATGCCAGTGTTCATTTCTGTGGATACAAGGCATTTTATGATGCTGGCGATGATAGCGAGGAGGATGAATTTACTGATAGCGAAGAGGATGTTCCATTGCTTAAAGCAGAGAATGGAAAACCTGAAACAAAAGCTGAAGAGTTGAAGGTACCTGAATCTAAAAAAGCTGTTGCCAAGGCTAGTGCATCAGCAAAACAAGTCAAGATTGTTGAACCGAAAAAAGACAATGAAGAGGACTCTGATGATGATTCTGACGAAGATGATGATTTTGGAAGTTCTGATGAAGAGATGGAGGATGCTGATAGTGACAGTGATGATGAGAGTGATGACAAAGAAGATGATGATGAAGAAACCCATCCTAAGAATAAGAAGGCAGATCTAGGAAAGAAGAGACCCAATGAATCTGCATCAAAAACTCCAGTTTCCTCCAAGAAAGCTAAGAATGCCACTCCTGAAAAGACTGATGGTAAGAAAGGTGGACATACAGCAACTCCTCACCCTGCGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCCAAAGCCAAGACTCCCAACAATGAAGCCAAGACTCCCATGTCTGGTGGACTCTCTTGCAAAAGCTGCAGCAAGTCTTTCAACTCTGAAAGTGGTCTGCAACAACATAACAAGGCAAAGCATGGTGGTCAGTGA 924 0.4318 MEFWGAEVKVGESVKVDPAEFEACIHLSQAALGEAKKDKSNEPVVLYLKVGQQKFVLGTLSREKIPQIPLELVLEKEFELSHNSKNASVHFCGYKAFYDAGDDSEEDEFTDSEEDVPLLKAENGKPETKAEELKVPESKKAVAKASASAKQVKIVEPKKDNEEDSDDDSDEDDDFGSSDEEMEDADSDSDDESDDKEDDDEETHPKNKKADLGKKRPNESASKTPVSSKKAKNATPEKTDGKKGGHTATPHPAKKGGKTPSSEAKAKTPNNEAKTPMSGGLSCKSCSKSFNSESGLQQHNKAKHGGQ* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1523 307 ProSitePatterns Zinc finger C2H2 type domain signature. 283 304 IPR013087 -
Gso12g1523 307 MobiDBLite consensus disorder prediction 200 218 - -
Gso12g1523 307 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Gso12g1523 307 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 303 - -
Gso12g1523 307 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 303 - -
Gso12g1523 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 307 IPR013087 -
Gso12g1523 307 MobiDBLite consensus disorder prediction 263 301 - -
Gso12g1523 307 MobiDBLite consensus disorder prediction 161 199 - -
Gso12g1523 307 MobiDBLite consensus disorder prediction 114 139 - -
Gso12g1523 307 MobiDBLite consensus disorder prediction 103 307 - -
Gso12g1523 307 Gene3D Nucleoplasmin core domain 1 101 - -
Gso12g1523 307 MobiDBLite consensus disorder prediction 233 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1523 Gso-Chr12 38645720 38648999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1523 1 304 C2H2 Transcription Factor Family AT5G03740 39.748 9.48e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g1523 NPL 9.4e-15 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1523 - - gmx:100795506 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1523 12 38645720 38648999 Gso11g3321 11 48990333 48993435 GST
Gso12g1523 12 38645720 38648999 Gso12g0691 12 6871939 6875298 PCT
Gso12g1523 12 38645720 38648999 Gso11g1427 11 16443726 16446721 PCT
Gso12g0691 12 6871939 6875298 Gso12g1523 12 38645720 38648999 PCT
Gso11g1427 11 16443726 16446721 Gso12g1523 12 38645720 38648999 PCT