Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1519 ATGGGGAGCAAGGTGAGCGACCACCACTTATCCACCGTCCGATCCATCGTGGGTTCCGAATTCTCCGACATGGACATCATCAGGGCCCTCCACATGGCCAAAAACGACGTCACTGCGGCCATCAACATCATCTTCGACACTCACACCGCCCCCAAATTCAAGGCCACGCGCCCCACCAATCCCCCACCAGTTTCTCCCCCAGAACCGACGCCTCCCGCTCCCACCGTCACCGCCAACTCAAACCACAGAGTCGGTGAACGACACAGCGACAGTAACCGCGACGATTGGTGGTTCGTGAGTTGTGGTGAAATGACGGGTTTGTCCACGTGTAAAGGGAGGACTATAAGCTCCGGCGAGACCGTGGTTTTCAAGTTCCCGGCAAAGAAGCTCTCCGCTTCGCCCTCTCCAGGGAAGGGGTTCGGGCGGGCAGTGGCTTGTTCGGAGATTGTTCGATTCTCGACGGAACAAGCTGGGGAGATTGGTAGAATACCGAACGAATGGGGTCGGTGCCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATACGCCCCTAATGTTTTGGGTATCATGGACTCCATTGTTTTGTCAGTGAGTGTATTTATCAATAGTTCGATGTTTGATAAGCATCACCAGGTTTCTCTCAAGGATGCTGCCAACTCCACTGATGAATCAGTGTTTCATCCGCTTCCAACTTTGTTTCGGTTGCTGGGTTTAAACCCTTTTAAGAAGGCGGAGTTAACTCCTGGTGATTTCTATTCCAACAAACGTCCTCTCAGTCAAAGGGTCCCATTACCACGTACCAAGTCTGAGCATCCTTCTCAAAATGGTCAGGAGAATGACAATGAGGATTCCATTTCTGAAATTGATGTTGAGAACATTGTTGGTGTTGGATCGAGCTCAGAGTTAGAGGAAATGGACCCCCCTGGTAATCTTATGTGTGAACTGCGGCCCTATCAAAAGCAGGCGCTTTATTGGATGATCCAGATGGAGAAGGGACAATCTATGGACGAGACAGCAACAACCCTCCATCCATGTTGGGAGGCATATCACCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCATTTTCTGGTGAAGCCTCAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCGTTGCCCATTCAGGAAAGGGTGGATCAATAGCCAGTCAACCCATAACCCAATCCTTTATTGAAGGTGGTGAAGTTAGTGATACAGTGCACAATTTTTCAAACATACCCAAGAAGGCAACTAAATTTGCTGGTTTTGATAAACTGATGAAGCAAAAGAATGTTCTAATGAGTGGTGGCAACTTGATAATATGTCCCATGACTCTTCTTGGGCAATGGAAGGCGGAGATTGAAACTCATGTGCACCCTGGGTCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCGCCCAAAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGCGAGAGTGCAGAGGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTGGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTTTAGCAGCTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACTCCGATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCATGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTAATTTACTGTGAACCCACAGAACCTGAAAAGGACTTTTATGGAGCCCTATTCAAAAGATCTAAGGTAAAATTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCCGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACCTATAGTGCTTCAGAAGGTGAAGTAAAAGATACACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAGCAAGGAGAGTGTCCAATATGTCTTGAAGTATTTGAAGATGCTGTGTTAACGCCTTGTGCTCACCGCTTATGCCGGGAATGCCTCTTGTCAAGTTGGCGAAATGCTACGTCTGGCTTATGTCCTGTTTGTAGGAAAACAATCAGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCTTGCAAGGTAACTGTTCTTTTGAATGAACTTGAAAATCTTTGCTCATCAGGCTCCAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTCGGAATAACATTCCGTTTGTTCGTCTTGACGGGACTTTGAATCAGCAGCAGCGAGAAAAAGTAATCAAGCAATTCTCCGAAGACGGCGAAACCCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTAGGTATAAACCTAACAGCAGCTTCTAATGCTTTTGTCATGGACCCATGGTGGAATCCTGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGTATTGGACAAACAAAGAAGGTTGCCATTAGACGGTTTATTGTGAAGCATTTGCTCTTGTGTTTAACATTGCAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGGAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCAAGGATTGAGGAGTTGAAGATGCTTTTTACTTAG 3039 0.4577 MGSKVSDHHLSTVRSIVGSEFSDMDIIRALHMAKNDVTAAINIIFDTHTAPKFKATRPTNPPPVSPPEPTPPAPTVTANSNHRVGERHSDSNRDDWWFVSCGEMTGLSTCKGRTISSGETVVFKFPAKKLSASPSPGKGFGRAVACSEIVRFSTEQAGEIGRIPNEWGRCLLPLVRDHKVRIEGQCKYAPNVLGIMDSIVLSVSVFINSSMFDKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPFKKAELTPGDFYSNKRPLSQRVPLPRTKSEHPSQNGQENDNEDSISEIDVENIVGVGSSSELEEMDPPGNLMCELRPYQKQALYWMIQMEKGQSMDETATTLHPCWEAYHLADKRELVIYLNAFSGEASIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGGSIASQPITQSFIEGGEVSDTVHNFSNIPKKATKFAGFDKLMKQKNVLMSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQSDVVITTYGILASEFSSESAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISLAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVIYCEPTEPEKDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYSASEGEVKDTPSRAYVQEVVEELRKGEQGECPICLEVFEDAVLTPCAHRLCRECLLSSWRNATSGLCPVCRKTISRQDLITAPTENRFQVDIEKNWVESCKVTVLLNELENLCSSGSKSIVFSQWTAFLDLLQIPFTRNNIPFVRLDGTLNQQQREKVIKQFSEDGETLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIRRFIVKHLLLCLTLQGTVEERMEAVQARKQRMISGALTDQEVRTARIEELKMLFT* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1519 1012 Gene3D - 650 1012 IPR027417 -
Gso12g1519 1012 Pfam SNF2-related domain 324 712 IPR000330 GO:0005524|GO:0140658
Gso12g1519 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 634 IPR027417 -
Gso12g1519 1012 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 1001 IPR027417 -
Gso12g1519 1012 Gene3D - 379 646 IPR038718 -
Gso12g1519 1012 SMART ring_2 768 807 IPR001841 -
Gso12g1519 1012 SMART ultradead3 317 618 IPR014001 -
Gso12g1519 1012 CDD RING-HC 768 807 - -
Gso12g1519 1012 MobiDBLite consensus disorder prediction 56 74 - -
Gso12g1519 1012 CDD UBA_Cbl_like 10 47 - -
Gso12g1519 1012 ProSiteProfiles Zinc finger RING-type profile. 768 808 IPR001841 -
Gso12g1519 1012 MobiDBLite consensus disorder prediction 258 294 - -
Gso12g1519 1012 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 729 832 IPR013083 -
Gso12g1519 1012 MobiDBLite consensus disorder prediction 52 90 - -
Gso12g1519 1012 Pfam HIRAN domain 103 203 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gso12g1519 1012 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 379 596 IPR014001 -
Gso12g1519 1012 MobiDBLite consensus disorder prediction 272 287 - -
Gso12g1519 1012 PANTHER DNA REPAIR PROTEIN RAD5 103 1012 - -
Gso12g1519 1012 CDD DEXDc_SHPRH-like 321 634 - -
Gso12g1519 1012 Pfam Helicase conserved C-terminal domain 839 950 IPR001650 -
Gso12g1519 1012 Pfam Zinc finger, C3HC4 type (RING finger) 768 807 IPR018957 GO:0046872
Gso12g1519 1012 CDD SF2_C_SNF 834 961 - -
Gso12g1519 1012 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 838 1012 IPR001650 -
Gso12g1519 1012 ProSitePatterns Zinc finger RING-type signature. 783 792 IPR017907 -
Gso12g1519 1012 SUPERFAMILY RING/U-box 756 814 - -
Gso12g1519 1012 SMART HIRAN_2 99 207 IPR014905 GO:0003676|GO:0008270|GO:0016818
Gso12g1519 1012 SMART helicmild6 867 950 IPR001650 -
Gso12g1519 1012 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 103 1012 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1519 Gso-Chr12 38581607 38591206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1519 1 1012 RAD5 or RAD16-like Gene Family AT5G22750 70.952 0.0 1496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso12g1519 SNF2_N 3.7e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1519 K15505 - gmx:100794452 1978.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1519 12 38581607 38591206 Gso11g3325 11 49038024 49046541 GST