Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1518 ATGGAAGAACCTCCCGTCGTGAGATCCAGGGGCCGCCCGCGCAAACGGAGGAGAGAAGACGACGCAACCGTCACCGGCGACGCGAAAACTCTTCCCGAGGCGAAGAAGATGATGCCAATTGCATTGGTTGGACGATACGTGCTGAAAGAGTTCCGCAGAAACACGGTTCTTCTCGGCAAAGTCGCGCGTTACGCGAGTGGATTGTACAGAGTCGTGTACGAGAGTGGCGGTTTCGAGGATTTAGATAGCAGCGAGATTCGTAGGATACTTCTCCTTGATAGTTATTTCGACGACGATTTGATTCGGAGGAAGGTTGAATTGGAGGAATCGGTGTTGCCGAAGATCGCTGCAGAGGAACCGGAGAAAGGTTCGAGCGAATTGCAAGGTGAATTATCGGTTGAGAACGAGGAGGAACGAGCTAAGACGGATGATGATGAGTCGTTCGGTGAGGCTAGGGATTCAAGTTCCGGTTCCGAAATGCCAGAAACGCAGATACCGCCGCCGCTTACGCTGCCGCCGTCTTCCGGAACAATTGGAGTGCCGGAACCGTGCGTTTTGAATCTCTTTTCGGTTTACGGATTTTTAAGATCGTTTAGCATTCGCCTGTTTCTGAGTCCATTTACTTTGGATGAGTTTGTCGGTGCTCTGAACTGTAAAGTTTCTAACACGTTGCTCGATGCAATTCATGTTTCGCTGATGCATATTTTGAAACGTCACCTTGAAAATATTTCACCAGATGGCTCGCGGCCTGCAACAAAATGCCTTAGGTGCAGTGATTGGAGTTTGCTTGATGCTTTGACTTGGCCTGTTTTTGTGTTTCAGTATTTAGCAATTTTTGGATACACAAAAGGACCTGAGTGGAAAGGATTTTATGATGAAATCTTTTATGGCGAGTATTATTTATTGCCTGCAAGTAGGAAATTGACAATATTGCAAATTCTCTGTGATGAAGTTTTGGCGTCTGAGGAGCTAAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATCAATTATGATAATGAAGATAGCCTTCCTGCTGAAAATGGGCCTAGAAGAGTCCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATGCTGAAACTAAGAAGTATGTTTCAGAATTGAATGCGGAGGATGATGGTGATGTTGATGGAAATGGAGATGAATGTCGCTTATGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCAGAAGGGGCATGGTATTGTCCAGAGTGCAAAATAAATTTGATTGGGCCTACAATTGCACGGGGGACATCACTTAAAGGGGCTGAAGTATTTGGAAAAGATTTGTATGGGCAAGTTTTCATGGGTACTTGTGACCACTTACTGGTACTCAATGTCAAAAGTGATGACTTTTGTCTTAAATACTACAATCAGAATGATATTCCTAGAGTTCTCCAAGTCCTTTATGCATCCGAACAACATAGACCTGTATACAATGGTATTTGCATGGCAATGTTAGAATATTGGAATATTTCAGAAAACTTCTTACCCCTCTGTGTCAGTAAACTTCCTCCTATGATTGAAGAAGAGCATAAAGCTGTTAGTTCGGTGAAGGCAGACTACAGTTTAACGTTTGGGAATGGGATTTGTAGTGATAATTTGGTGCCATCTCTTGATGCTTCATTGGTTACAACTCGAAGTCCTGCTCCTGGAAGCAGTGGCAATGCAAGAACTACTGTGAATCTGAAGCTTCACGAGGAAACTGCAATGGATTCGTCTGTTTCAACTAACCATCAGTCTGACCCAAAGTGCCGAAATTATGTTAATAGGTCAGCTGCAGTAAGCCCTGCCAAGTGCTCCTTGGTAAGCAGCCAATTTAGTAATTATGGGGACGCTAATGATATAGGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGACCAATCTGGTTTTGGAAAGTGCAAAAGCAGTTTAATTAATGATTTTGTGTACATGGGTTGCTCCTATAAACCACAGTCATATATTAATTACTATATGCACGGTGATTTTGCTGCATCTGCTGCTGCTAACCTGGCCGTTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTGTCTGGCAACTTGGGGAAAGCTACATCTGGAAACACTTATTTGCTAGCAAAAGCATTCTCCCAAACAGCTTCACGCTTTTTTTGGCCGAGTTCCGAAAAGAAGCTTGTGGAGGTTCCAAGAGAGAGGTGTGGATGGTGCATTTCTTGTAAAGCCCCTGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTATAAGTGCCACCAAAAGTGCAATGAAAATCCTTTCTGGTTTTGCTCCTGTAAGGAGTGGAGAAGGAATCATCCCTAGCATTGCTACATATGTTATATATATGGAGGAAAGTTTGCATGGTTTAATAGTTGGGCCCTTTCTAAGTGAATGGTATAGAAAGCATTGGCGTAAACAGGTGGAACGAGCTAAATCATTTAGTGATATAAAGCCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTTAAGTTGATGGATGATTGGTTGGCTGAATTTTCTACAATGCAAAGTGCTGCATGTACTCTTGGAACAACACAGAAACGTGCAACTTGTGGGAGGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGCTGGTGGTTGTCAGGAAAATTTTGCATGGTGGCATGGCGGGAAATTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGTCAGAAAAGGAGCCCGCCAAGGTGGTTTGAGGAAAATTTCGGGTATATTCTATGCTGATGGCTCTGAGATTCCTAAAAGAAGCAGACAGCTAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCATCTCAGCTGGCACTTCAGGTCCGATATCTAGATTTTCATATCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCAGGATGTGAAAGGTCAAGATACTGAAGCTTCTGCTTTTAGGAATGCAAATATTCGTGATAAAAAAATTGCAGAGGGCAAAATTTTATACAGAGTAGCCTTTGGAAGCCAGAAACATCTTCCTTCTCGGGTAATGAAAAATGTTGAAATAGAGCAAGGTCCTGAAGGGATGGAAAAATATTGGTTTTCTGAAACACGTATTCCTTTATATTTGGTAAAAGAGTACAAATTACGCAATGGAAAAGTACTATCTGAAAAAGAGTACCTGCATATTACATCTCATGTGCACAAAAGGCGGTTGAAAGCTACCTACAAGGACATATTTTTTTACCTTACCTGCAAGAGAGACAAATTGGACATGTTATCATGCTCTGTATGTCAGCTGGTTGTTTTAGTTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCCGTGAGTTCAACAGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCCTGTAATGAATCTCCAACTAGTCCCTTACTCTTACAAGGACAAGAACGTAGCACTTTGGCAGTTCTGAAGGGGCCAAGGCCTAAATGTGATGGTCAAGGATTGATTTCTACTAGGACAAAGAATAGTCGACTTGACATGAAACTAGTTGCTTCTGATTTCCCTTTGGAAACAAAAGGCCGTAGCAGAAGTTGTTCTTGGGGTGTTATATGGAAAAAGAAGAATAATGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTTTAAAGGGAGGTTCAGGCCTGCCTCAATTGGATCCTGTTTGTCGCTTGTGCCATAAACCATATAGATCTGATCTAATGTATATTTGCTGTGAAACATGCAAACATTGGTATCATGCTGAAGCCGTTGAACTTGAAGAATCCAAACTTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGCAGGATAAAGTCACCTGTGTGTCCTTACTCTGATTTGTATAAGATGCAAGAGGGCAAGAAGTTACTCACAAGGGCTTCAAGGAAAGAGCACTTTGGGGCAGATTCTGATTCTGGTACACCTATTGACACGAGAACATGTGAGCCTGCAACTCCTATCTATCCTGCAGGGGATGTCTCTAGACAAGACAATGATCCTCTGTTGTTCTCCCTTTCAAGTGTTGAGCTCATTACAGAACCCCAGTTAAATGCAGATGTTGCAGGTAATACTGTCTCTGGGCCAGGGCTTCTGAAATTACCTAAACGTGGGAGGGAGAACAATGGTTCTTTTAGAGGTAATCTTCATGCTGAGTTTTCAACAAGCAATGAAAATGAAATGGTGTCCAAATCTGTAAAAGATTTATCACCTGTAGAATATGGCTCTGCTGACTGCAATCTTCTGAATAACTCCGAAATTGTTAAATTTGATGCATTGGTGGATTTTGAACCTAATACCTACTTCTCTCTGACTGAACTGCTCCACACAGACGATAATAGTCAATTTGAGGAAGCTAATGCATCTGGGGACTTAGGGTATTTGAAAAATTCTTGTAGATTAGGTGTACCTGGAGATTGTGGGACTGTTAATTTAGCATCCAACTGTGGATCTACAAATTCGTTACAAGGAAATGTTAATAATTGTCGGCTATGTTCACAAAAGGAACTGGCCCCTGATCTCTCTTGTCAGATTTGTGGGATTAGGATTCACAGCCATTGTTCACCTTGGGTTGAATCACCATCTCGGCTTGGTAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4842 0.423 MEEPPVVRSRGRPRKRRREDDATVTGDAKTLPEAKKMMPIALVGRYVLKEFRRNTVLLGKVARYASGLYRVVYESGGFEDLDSSEIRRILLLDSYFDDDLIRRKVELEESVLPKIAAEEPEKGSSELQGELSVENEEERAKTDDDESFGEARDSSSGSEMPETQIPPPLTLPPSSGTIGVPEPCVLNLFSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHVSLMHILKRHLENISPDGSRPATKCLRCSDWSLLDALTWPVFVFQYLAIFGYTKGPEWKGFYDEIFYGEYYLLPASRKLTILQILCDEVLASEELKAEMNMREESEVGINYDNEDSLPAENGPRRVHPRYSKTTACKDAETKKYVSELNAEDDGDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPEGAWYCPECKINLIGPTIARGTSLKGAEVFGKDLYGQVFMGTCDHLLVLNVKSDDFCLKYYNQNDIPRVLQVLYASEQHRPVYNGICMAMLEYWNISENFLPLCVSKLPPMIEEEHKAVSSVKADYSLTFGNGICSDNLVPSLDASLVTTRSPAPGSSGNARTTVNLKLHEETAMDSSVSTNHQSDPKCRNYVNRSAAVSPAKCSLVSSQFSNYGDANDIGLPMNLSLQTKGDQSGFGKCKSSLINDFVYMGCSYKPQSYINYYMHGDFAASAAANLAVLSSEDSRSEGHVSGNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCISCKAPVSSKKGCMLNHAAISATKSAMKILSGFAPVRSGEGIIPSIATYVIYMEESLHGLIVGPFLSEWYRKHWRKQVERAKSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTMQSAACTLGTTQKRATCGRRKKQLSINKVTAGGCQENFAWWHGGKFTKSVFQKAVLPKSMVRKGARQGGLRKISGIFYADGSEIPKRSRQLVWRAAVQMSRNASQLALQVRYLDFHIRWSDLIRPEHNLQDVKGQDTEASAFRNANIRDKKIAEGKILYRVAFGSQKHLPSRVMKNVEIEQGPEGMEKYWFSETRIPLYLVKEYKLRNGKVLSEKEYLHITSHVHKRRLKATYKDIFFYLTCKRDKLDMLSCSVCQLVVLVGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKESCNESPTSPLLLQGQERSTLAVLKGPRPKCDGQGLISTRTKNSRLDMKLVASDFPLETKGRSRSCSWGVIWKKKNNEDTGFDFRLKNILLKGGSGLPQLDPVCRLCHKPYRSDLMYICCETCKHWYHAEAVELEESKLFDVLGFKCCKCRRIKSPVCPYSDLYKMQEGKKLLTRASRKEHFGADSDSGTPIDTRTCEPATPIYPAGDVSRQDNDPLLFSLSSVELITEPQLNADVAGNTVSGPGLLKLPKRGRENNGSFRGNLHAEFSTSNENEMVSKSVKDLSPVEYGSADCNLLNNSEIVKFDALVDFEPNTYFSLTELLHTDDNSQFEEANASGDLGYLKNSCRLGVPGDCGTVNLASNCGSTNSLQGNVNNCRLCSQKELAPDLSCQICGIRIHSHCSPWVESPSRLGSWRCGDCREWR* 1614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1518 1613 PANTHER PHD FINGER FAMILY PROTEIN 6 1610 - -
Gso12g1518 1613 Pfam DDT domain 184 238 IPR018501 -
Gso12g1518 1613 MobiDBLite consensus disorder prediction 1 25 - -
Gso12g1518 1613 MobiDBLite consensus disorder prediction 116 174 - -
Gso12g1518 1613 SUPERFAMILY FYVE/PHD zinc finger 378 436 IPR011011 -
Gso12g1518 1613 SUPERFAMILY FYVE/PHD zinc finger 1288 1346 IPR011011 -
Gso12g1518 1613 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 297 329 IPR028942 -
Gso12g1518 1613 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 6 1610 - -
Gso12g1518 1613 ProSitePatterns Zinc finger PHD-type signature. 392 433 IPR019786 -
Gso12g1518 1613 SMART PHD_3 1565 1610 IPR001965 -
Gso12g1518 1613 SMART PHD_3 1292 1340 IPR001965 -
Gso12g1518 1613 SMART PHD_3 1132 1181 IPR001965 -
Gso12g1518 1613 SMART PHD_3 391 434 IPR001965 -
Gso12g1518 1613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1283 1353 IPR013083 -
Gso12g1518 1613 CDD PHD_SF 1292 1339 - -
Gso12g1518 1613 ProSiteProfiles DDT domain profile. 182 242 IPR018501 -
Gso12g1518 1613 Pfam PHD-finger 392 434 IPR019787 -
Gso12g1518 1613 ProSiteProfiles Zinc finger PHD-type profile. 389 436 IPR019787 -
Gso12g1518 1613 MobiDBLite consensus disorder prediction 132 152 - -
Gso12g1518 1613 SMART testlast3 182 242 IPR018501 -
Gso12g1518 1613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 383 437 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1518 Gso-Chr12 38558192 38565923 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1518 272 520 EF-hand Containing Proteins AT5G22760 48.519 1.04e-72 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Gso12g1518 DDT 4.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1518 - - gmx:100808614 3250.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1518 12 38558192 38565923 Gso11g3326 11 49052035 49059949 GST
Gso12g1518 12 38558192 38565923 Gso12g0686 12 6767907 6776971 PCT
Gso12g0686 12 6767907 6776971 Gso12g1518 12 38558192 38565923 PCT