Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1510 ATGGCGGAGGACCGTAGTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACCGAAGATTACAGGCGCGGAGGGTACCACGCGGTTCGGATTGGTGACACTTTCAAGAATGGGAGCTATGTGGTGCAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTTTGGCTCGCTTGGGACACTCACAAATCGCGATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAAGCGGCAATGGATGAAATAAAGATTCTTAAACAAATTGCTGACGGGGATCCAGATGACAAGAAATGTGTTGTAAAGCTTTTGGATCACTTTAAGCATTCAGGACCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGAGATAATCTTCTCACACTTATCAAATATAGTGATTATCGAGGAGTTCCCCTTCCCATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCATCGTGAGCTTTCTGTAATACACACTGATTTAAAGCCTGAGAATGTCTTGCTTTTGTCTCCAATAGATCCATCTAAGGATCCTAGAAGATCAGGCATTCCACTTATCCTTCCAAACACGAAGGATAAGACTGTGACCAAGAATGGGATAACAATAGAAAATAAAAGTTTGAATGGAGATCTGACCAAGAATCAGAAAAAGAAATTGCGGAAAAAGGCTAAAAAGGCTGCTCAAGGCTGTGCTGGGAAGGAAAATGCTGAGGAAGTTGAGGAGGATTCCAAAGCACCTGACGAGCAAGATGATTGTAGTAATGATGTGAAACCAAGTGTAGAACCTGGTGAAGTTAAACCTAATAGTCCTGTGAGGAAAGATCAATCGACAAAGACTTCTGAAAATAAAGATATTCCTCAAGGAAGTCATGGTAATAGGAGGGGTAGCCGCTCTACAAGAAAGAAGTTGCTCGAAGCTGTTGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAGGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTGTGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCTCTGGCGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTGGCATTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGATGCTATTCCCGAGATTTTTTCAACAGATATGGAGATTTGAGGCACATCCGTCGGTTGCGTTTCTGGCCTCTTAATAAGGTGCTGACAGAGAAGTATGATTTCAGTGAACAAGAAGCAAATAACATGACCGATTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACTGCTGCTCAATGCCTTCAGCATCCTTGGTTCAGTGCAGGTCCCCAGACTCTTGAGCCCTCATTGACTGCTGTGAAGCATGATGCTATTGAAGGGGAAATATCTGAAAAAATGCAGAGGGAAAAAGCTGAGCAGGAGGCTGTGGAAGTTGGCATGGGGAATATGGCCATAGATGGAAATCCAAAGCCACTCAAAGAGTTCCAATCTATGAAGCCATCAGAATAG 1638 0.4298 MAEDRSEVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGSYVVQSKLGWGHFSTVWLAWDTHKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRRSGIPLILPNTKDKTVTKNGITIENKSLNGDLTKNQKKKLRKKAKKAAQGCAGKENAEEVEEDSKAPDEQDDCSNDVKPSVEPGEVKPNSPVRKDQSTKTSENKDIPQGSHGNRRGSRSTRKKLLEAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELASGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGCYSRDFFNRYGDLRHIRRLRFWPLNKVLTEKYDFSEQEANNMTDFLLPLLDFVPEKRPTAAQCLQHPWFSAGPQTLEPSLTAVKHDAIEGEISEKMQREKAEQEAVEVGMGNMAIDGNPKPLKEFQSMKPSE* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1510 545 SUPERFAMILY Protein kinase-like (PK-like) 35 491 IPR011009 -
Gso12g1510 545 CDD STKc_SRPK 29 482 - -
Gso12g1510 545 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 542 - -
Gso12g1510 545 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Gso12g1510 545 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1510 545 MobiDBLite consensus disorder prediction 281 304 - -
Gso12g1510 545 Pfam Protein kinase domain 319 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1510 545 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1510 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Gso12g1510 545 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Gso12g1510 545 MobiDBLite consensus disorder prediction 224 310 - -
Gso12g1510 545 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso12g1510 545 MobiDBLite consensus disorder prediction 182 201 - -
Gso12g1510 545 PANTHER SERINE KINASE-LIKE PROTEIN 8 542 - -
Gso12g1510 545 Gene3D Transferase(Phosphotransferase) domain 1 123 483 - -
Gso12g1510 545 MobiDBLite consensus disorder prediction 522 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1510 Gso-Chr12 38489484 38493155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1510 6 533 EF-hand Containing Proteins AT5G22840 70.149 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Gso12g1510 Pkinase 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1510 K08832 - gmx:100791829 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1510 12 38489484 38493155 Gso11g3333 11 49112324 49115986 GST
Gso12g1510 12 38489484 38493155 Gso12g0682 12 6716391 6720765 PCT
Gso12g0682 12 6716391 6720765 Gso12g1510 12 38489484 38493155 PCT