Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1504 ATGGCAGTTGCTGGCGTGCATAATGTGGCTGTGCAATCTACTTTCCTAAGGGAATCCCATTCTCAATCATCTGGGAGGCAGGGAGATGGAGGGAGGGGAGGCACCCGGTCGCCTTCGGTCTTGCAAATGTGGCGAGAGATTGAAGATGAGCAGGTAGTGAGACAAGTTCAAGGAAGACCTGGGGAGGTACAAAGGAGTGATGGGTTGGTTGTGGACCTCTCACAGGAAAATGTGCCCAATAGCAGCAACCAGAGAGAAGAGCATATGATAGAGGATGCAGTTTTGGGTGAGAATGATTCTGAAACCTGGTCGCAAAGTCAGAATGAGTTCCATGATGAACAGGAGGAATTAAACAATTCTAGCCGTGAAACCTCCTCTGATTTTGGAGTAGTTGAAAGGGAAAGAGTGAGACAAATATTCAGGGAATGGATGAATAGTGGTTCTAGGGGTCATGCATCGAATAATTCCCAAGGAAATAATTCAAGGGGAGAATGGCTGGGGGAAACTGAGCAGGAAAGGGTGAGTGCCACAAGGGAGTGGGTACAGATGAGTAGCCATCAGAGAGGTGTTTCTTCTGGGGAAAATAGGGAAGAGCAATCTTCTGAAAATGGTACCCAAATTGAATGTGTTCGTGATGGATTTGTTGTTAATCAGAACGAGGGCCAATGCCAAACTGAGCATACACGGAGGGGAATCCGTAAATTATGGGGTCGACAGGTGTTTCTTGATATGCTTAAGAAGGCTGAGATGGAAAGACAAAGAGAAGTACAGGAACTGTTGGACCATCGAGTTGTATCTCATTTTCCCCATCGCAATCGCATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGATAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAAAAGCAGACTGTATCAGGTCTAAGGGAAGGTTTCGTTTTTAGAAAGGACAATTTTGGTTGTAGTCATGCAACCAGTAACACATCTGATACCTCATCCGAGAACGACATTGATGTTAATACAATTGAAGACACTGGAGCTAGCAGCTCACAAGCAGTCCCAACTGTACATTCTCAACAATCTGAACCTAATAACAGGGTAAGTGATGGACTTGAGATATCAGGTGATCAGATTTGTTCAAAAGGAACCATTTGTGAGAATTTAGATTGGCAAGGCTCTACTGCTCATGTGGAAGCAAGAGATTTGGAATCATCTTTCAGTACCAGGGTTGAAAGAGGAGATGGCACTGGAGGAAATGTTGATATGATGCCAACTGAAAATCCTTCTAATGACTGTAGTCAACTAAGCTTGCAAATTGAAGATACAGAGCATGACAATATGCATGAGTTTAGTGAGGTACATACTGAGCAATCTCAGCGGGGTGATATAAATAATGATGAAAGCAATTTTTCAAATCATGATGATCGTGTATACAGCAATATTGTTGATGATGTAGATTTGATTGAATCTATTGCTCTGGAAGGGGAGCAACAGGAAGAAGTTATTATTGAAAATGACGGAAGTGACTGGCATCAAAGTGTGGATGATATTCAGCTCAGTAGCACAACAAATGAATGGCCCCAAAACATATTGGGAAGTGAAGATGGAGAAAATTCTCGTATGCAGGAGCAAGAAGTCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGATTTTATTTTCCTGAAGATGACAATGTATACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGATCAATTAATACAATCATATGTTGAAAGGCAAGGTCATGCTCACGTTGAATGGGAGCTGCAAGAGACAACCCCTTCTTCTCCCTTGGCAGAACAAGTATCGGGGCAACGGAGTAGGGGTCCAATTGTTGGTCCTCAGGCTACTGTTAATAGCTCACTTAACAGACCCTTGCCACCAACGCCTCCGCCTCAGCCTTTATGGGATCGGCACTCACGTCATGACAATTGGTCCCAGAGTGACATAAATAATCAGCGCTTAGGAATTGTGCGTTCATTTGCCGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAACAAAGGATGAATAATATGCAGAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTGCAACGCTCAATAAGACAAGAAGTCTCTGCAGCCCTAAATCGCTCAACTGGTTCATCAGTCTTAGATGACCAAATGGAATTCATCACAGGAATACAAAACCGTGTTTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGTTGTATATGCTGCGAAAGCAATATTAATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCCAATGATTTGCTCCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGAGCTTATTCTATACAATAG 2589 0.4307 MAVAGVHNVAVQSTFLRESHSQSSGRQGDGGRGGTRSPSVLQMWREIEDEQVVRQVQGRPGEVQRSDGLVVDLSQENVPNSSNQREEHMIEDAVLGENDSETWSQSQNEFHDEQEELNNSSRETSSDFGVVERERVRQIFREWMNSGSRGHASNNSQGNNSRGEWLGETEQERVSATREWVQMSSHQRGVSSGENREEQSSENGTQIECVRDGFVVNQNEGQCQTEHTRRGIRKLWGRQVFLDMLKKAEMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIDNNRSTSIAESELGLLRQKQTVSGLREGFVFRKDNFGCSHATSNTSDTSSENDIDVNTIEDTGASSSQAVPTVHSQQSEPNNRVSDGLEISGDQICSKGTICENLDWQGSTAHVEARDLESSFSTRVERGDGTGGNVDMMPTENPSNDCSQLSLQIEDTEHDNMHEFSEVHTEQSQRGDINNDESNFSNHDDRVYSNIVDDVDLIESIALEGEQQEEVIIENDGSDWHQSVDDIQLSSTTNEWPQNILGSEDGENSRMQEQEVPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAEQVSGQRSRGPIVGPQATVNSSLNRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSVLDDQMEFITGIQNRVSPDDKSKWECVRKGLCCICCESNINSLLYRCGHMCTCSKCANDLLQSRRKCPMCQAPVVEVIRAYSIQ* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1504 862 Coils Coil 728 755 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 352 372 - -
Gso12g1504 862 PANTHER PROTEIN, PUTATIVE-RELATED 1 862 - -
Gso12g1504 862 ProSiteProfiles Zinc finger RING-type profile. 810 849 IPR001841 -
Gso12g1504 862 MobiDBLite consensus disorder prediction 147 165 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 98 130 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 55 86 - -
Gso12g1504 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 790 860 IPR013083 -
Gso12g1504 862 MobiDBLite consensus disorder prediction 641 675 - -
Gso12g1504 862 Pfam Zinc finger, C3HC4 type (RING finger) 807 854 - -
Gso12g1504 862 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 862 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 146 206 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 14 40 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 14 30 - -
Gso12g1504 862 CDD mRING-HC-C3HC5_NEU1 810 848 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 106 120 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 176 206 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 641 696 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 407 435 - -
Gso12g1504 862 MobiDBLite consensus disorder prediction 70 84 - -
Gso12g1504 862 SUPERFAMILY RING/U-box 809 855 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1504 Gso-Chr12 38374952 38380101 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1504 - - gmx:100804887 1614.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1504 12 38374952 38380101 Gso11g3337 11 49161963 49173492 GST
Gso12g1504 12 38374952 38380101 Gso12g0671 12 6567238 6572856 PCT
Gso12g1504 12 38374952 38380101 Gso11g1446 11 16771732 16777084 PCT
Gso12g0671 12 6567238 6572856 Gso12g1504 12 38374952 38380101 PCT
Gso11g1446 11 16771732 16777084 Gso12g1504 12 38374952 38380101 PCT