Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1503 ATGGCGAAGGGCGCCGATTCCGACGAGTTCGTTGTGCTTTCTAGGGTTCGTACGGGTCTCAAGAGGGAGTTCGCATTCGCCATGAAGGCCCAATCTGAGATCTGCGGCGGCTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGGGTCGAGGCCCCGGTTCAGCCCCCCTCGGCCCGGAAAAGGTCGAGGAAGTCCGAGGAGGCGAAAACCTTGGAGGATGCTATGAGCGAGGAAGAGGTCAAGAGCGACGTGGTGGATCTTCAGAGCGATGATGAACCTAAGAATAATAATCACGTGGGAGAATCAGAATCCGCGGCAATGCAGGTTTGTGAGGAGGAACCCAAGAGTGACGTGGTGCTAGAGACTCTTATCAGCGAAGAGCAACCGAAGATGTTAGAACCTGAATCTGTTATCAGCGAAGAGGAACCGAAGGTGTTGGATGATGTTATCAATGAAGAGGAAGCGATTGTGGCCGAGACGTTGAAGGAACAGGAACCTATTGTGCCTGAGACATTGAAGGAAGAGGTTGTGGATGAGATGGCAGAACAACCCCTTTGTATAGAGGAATCGGAGGAGAAAGATTCTAATGGGGTTGCCCTAGCTTTGGTTAATGATGGTGCTAAGGGGAAGAAGAGCATGAAGAAGCGGTTGGAGAGACCTCAATCGGAGAGAAGGTTTACGCGGTCGGCATTGAAGGTAAAATCCGAGGAAACAAACGATGGGGAACATGTTGGTGTGGCTGGAATTAGTGATGGTGTTAAGAGGGAAACTGAAGCTGGGGCTTCGTTGGTAATGACTACTCCTAGTTCGGTGAAGTTTTCGAATAGAGGGAAACTGAAGAAGTTTCCTGCCAAGTTGAGGGATCTTCTGGCAACAGGGATTCTTGAGGGGCTGCCAGTGATGTACATGAAGGGAGTGAAGGCAGGTTGGAAAGACGGGGAAAAGGGGCTTCAAGGAGTGATTCAAGACTCTGGTGTTTTGTGCTTTTGTAAGATTTGTAAGGGGGTTGAGGTTGTCACACCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAACAAGCGGCCCCCTGAGTATATTTACATCCATGATGGGAATAGTGGAAAAACCCTCCGTGATGTCATGAATGCCTGCTGCTGTTGCGATTTTCCATTGGAGTCCATGGATGAGGCTGTCCAAAAGCTCCTTGGTGACTTCACTATGAAGAAATCTTCCATCTGTTTGAACTGCAGAGGGGCATGCAAGGGTGTGTCAAGGCTAGTATGTGATTCATGCTTAGTAAGCCCCGCTCAAACAGCCGTGGCTAGCAACAAAGGAATTTCACAACCAGTTCAACCCAGATCACCAGAACCAGTTGTGATTCAAAAATCATTAGACAATGAAGTGCAGCCAAATTCATTACACAATGAGGTGCAGCCAAATAAATTAGACACTGGGATGCAGCCAAACTCATTAGACAATGGCATGGAGCCAGATTCACTAAACAATAGTATGAAGCCAAAATCGTTTAGCAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATTTGCGCTTGCATAAGTTGGTATTTGAAGCAGATGTTTTGCCAGATGGAACTGAACTAGCCTACTATGCTCATGGACAGAAACTGTTGGTTGGTTACAAAAAGGGATATGGAATTTTTTGTACCTGCTGCAATGAGCAGGTCAGTGCCTCTCAGTTTGAAGCTCATGCTGGCTGGGCATCTCGACGCAAACCTTACCTGCACATATACACATCTAATGGAATCTCTCTCCATGAGTTGTCCATCTCTTTATCAAAAGATCATAGGAGGTTTTCCAACAATGACAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTCTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGATTGTGTCCCTTTACCATGCATTCCTAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGACAGGCATGGGCAACACGAGGTGAATGCTCTGGCAGCTGCAGGAAGGATTGCAGGCCCTGATATTTTGGAACTGATGAACAAAAGATGCATTCGTGTTGTCAGAACTTTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCCCAATTTCAGTAAAAGCTTTGGTCCTCAGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGATCATAACATGGAGAACCTAGAGGAATTGCCTGTTGGAAATTGGTTCTGTAGTGGAAATTGCAGTCAAATTCATACTGCTCTGATGGATCTGGTGGCTTCTAAGGAGAAGGATGTCCCAGATCCCCTTCTAAATTTGATTAAAAAGAAGCATGAAGAGAAAAGTTTAGACATTGGAGCTGGTCTTGATGTTAAATGGAGGGTTATAAACTGGAAGTTAGATTCCGATTCTGTTGAAACTAGGAAATTGCTTTCAAAAGCTGTTGCCATTTTCCATGAGAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGTGATTTCATTCCTGCAATGTTATTTGGAAGGAACATTCGTGGTCAGGATTTTAGTGGAATATACTGTGCAGTGCTTACTGTCAATGGGGATATCGTGTCTGCTGGAGTATTTCGTGTCTTTGGGTTAGAAATAGCTGAGCTTCCATTGGTGGCGACAACTGCTGATCATCAAGGACAGGGTTATTTTCAGTGCCTGTTTTCTTGTATTGAGACGCTACTTGGATCTTTAAATGTGAAAAACCTTGTCCTACCAGCTGCTGATGAAGCTGAATCAATATGGACTGGTAAATTTGGCTTTACAAAGCTACCTCAAGATGAGATAAACAAATATAAGAAATTTTATCGCATGATGATATTTCAAGGGACCTCAGTGTTACAGAAGCCTGTTGCTGAAGCACTCTGA 2949 0.4537 MAKGADSDEFVVLSRVRTGLKREFAFAMKAQSEICGGSLGRTRASKNRVEAPVQPPSARKRSRKSEEAKTLEDAMSEEEVKSDVVDLQSDDEPKNNNHVGESESAAMQVCEEEPKSDVVLETLISEEQPKMLEPESVISEEEPKVLDDVINEEEAIVAETLKEQEPIVPETLKEEVVDEMAEQPLCIEESEEKDSNGVALALVNDGAKGKKSMKKRLERPQSERRFTRSALKVKSEETNDGEHVGVAGISDGVKRETEAGASLVMTTPSSVKFSNRGKLKKFPAKLRDLLATGILEGLPVMYMKGVKAGWKDGEKGLQGVIQDSGVLCFCKICKGVEVVTPTVFELHAGSANKRPPEYIYIHDGNSGKTLRDVMNACCCCDFPLESMDEAVQKLLGDFTMKKSSICLNCRGACKGVSRLVCDSCLVSPAQTAVASNKGISQPVQPRSPEPVVIQKSLDNEVQPNSLHNEVQPNKLDTGMQPNSLDNGMEPDSLNNSMKPKSFSNGMKHSASRGKSQGRLTRKDLRLHKLVFEADVLPDGTELAYYAHGQKLLVGYKKGYGIFCTCCNEQVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDHRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRHGQHEVNALAAAGRIAGPDILELMNKRCIRVVRTLEVDHGGCALCSRPNFSKSFGPQTVIICDQCEKEYHVGCLKDHNMENLEELPVGNWFCSGNCSQIHTALMDLVASKEKDVPDPLLNLIKKKHEEKSLDIGAGLDVKWRVINWKLDSDSVETRKLLSKAVAIFHERFDPIVDSTSGRDFIPAMLFGRNIRGQDFSGIYCAVLTVNGDIVSAGVFRVFGLEIAELPLVATTADHQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLPQDEINKYKKFYRMMIFQGTSVLQKPVAEAL* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1503 982 Coils Coil 61 81 - -
Gso12g1503 982 MobiDBLite consensus disorder prediction 458 518 - -
Gso12g1503 982 MobiDBLite consensus disorder prediction 57 98 - -
Gso12g1503 982 Gene3D - 807 976 - -
Gso12g1503 982 ProSiteProfiles Zinc finger PHD-type profile. 619 664 IPR019787 -
Gso12g1503 982 SUPERFAMILY FYVE/PHD zinc finger 705 762 IPR011011 -
Gso12g1503 982 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 865 951 IPR016181 -
Gso12g1503 982 SMART PHD_3 710 766 IPR001965 -
Gso12g1503 982 SMART PHD_3 621 662 IPR001965 -
Gso12g1503 982 Pfam Tify domain binding domain 319 377 IPR032308 -
Gso12g1503 982 Pfam Tify domain binding domain 554 602 IPR032308 -
Gso12g1503 982 CDD PHD1_AIRE 621 661 - -
Gso12g1503 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 768 IPR013083 -
Gso12g1503 982 MobiDBLite consensus disorder prediction 36 109 - -
Gso12g1503 982 ProSitePatterns Zinc finger PHD-type signature. 622 661 IPR019786 -
Gso12g1503 982 PANTHER AUTOIMMUNE REGULATOR 1 977 - -
Gso12g1503 982 SUPERFAMILY FYVE/PHD zinc finger 608 663 IPR011011 -
Gso12g1503 982 PANTHER AUTOIMMUNE REGULATOR 1 977 - -
Gso12g1503 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 685 IPR013083 -
Gso12g1503 982 MobiDBLite consensus disorder prediction 458 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1503 Gso-Chr12 38350162 38357091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1503 279 978 PHD Transcription Factor Family AT2G36720 44.536 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1503 - - gmx:100803825 1989.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1503 12 38350162 38357091 Gso11g3338 11 49182485 49189430 GST