Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1501 ATGATTTCAAGGGCCACATCTAGCTTTCAAAGTGTTCATCATCAAGGGCTTCAGATGTTCCCTGACGCGGAAGATTTTGTGTCACCCTCTGTGGAATCAGGCTCAGGTACTTCACACTCTAGTTCCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGCTTAGTGAGGTGCAGACCCTGGTAGGTGTTATTCTCTCCCCAAATCAAAGCCTACCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCGTAGTGACTGCCACATCAATGATGTTCACCTGCCAACAGATGGCTCTCACTGCCCCTCCAGGTACTAATAATAATACTAACAAATTGCACCACCACCAGAACAAGTCGTTGCCTCACTCATCAAATATTAATTTTGCCACAAATGGAAGCTGTGTACTTGGTAATAACATAGGAACAGATAATATCAGTGACCATCATGGTTTATTTTCCAGTACTGAGTCAGAGACACTTGACTGGTTTAGTGAAAGCTATAACAATAACGATGATAATAGCAATAGCAATATTATTAGTAAGGTTGCGATCAGTGAAAACAATATTATTACTAGAGGAGGAGGAGGAGGAGGAGTACTGTCTCCAAGGGATGAACCTAATGAAGAAGGGCTTTCACCAAAGATGAATAGTGATGATATAATTATTGAATTAGATGCTGCGAATCTGTTAGCTAAGTACACACACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCACGGGGATGAGTACAAGACCAATGCTGCTTTGAGTAACCCAATTAAGAACCAAAGAGATCTAGAGTGTTTGATGAGTGTGAAGCCAAAGAGGTATTCGTGTCCTCAAGAGGGGTGTAGGTGGAACCAGAGGCATGCCAAGTTCCAGCCACTGAAGTCAATGATTTGTGCCAAGAACCATTACAAGAGAAGCCACTGCCCCAAAATGTACGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCGGTGCTCTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCTGTGCTCGTGTGGCACCTCGTTTTCTAGAAAAGACAAGCTTATGGGTCATGTGGCTTTGTTCGTGGGGCACCAACCAGCTATCAACAACAATGGTCTCTCATATTCGGGAAAATTAATTAGAGCAGCACCACACATTGCAAATGCAGATTGA 1233 0.4404 MISRATSSFQSVHHQGLQMFPDAEDFVSPSVESGSGTSHSSSLLFNLSILKDKLSEVQTLVGVILSPNQSLPESTSMAISSMNSTIQEIVVTATSMMFTCQQMALTAPPGTNNNTNKLHHHQNKSLPHSSNINFATNGSCVLGNNIGTDNISDHHGLFSSTESETLDWFSESYNNNDDNSNSNIISKVAISENNIITRGGGGGGVLSPRDEPNEEGLSPKMNSDDIIIELDAANLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNQRDLECLMSVKPKRYSCPQEGCRWNQRHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWLCSCGTSFSRKDKLMGHVALFVGHQPAINNNGLSYSGKLIRAAPHIANAD* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1501 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Gso12g1501 410 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Gso12g1501 410 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 7 391 IPR044300 GO:0010044|GO:0010447
Gso12g1501 410 Gene3D Classic Zinc Finger 224 296 - -
Gso12g1501 410 SUPERFAMILY beta-beta-alpha zinc fingers 239 266 IPR036236 -
Gso12g1501 410 MobiDBLite consensus disorder prediction 201 220 - -
Gso12g1501 410 PANTHER OS08G0562300 PROTEIN 7 391 - -
Gso12g1501 410 SMART c2h2final6 332 354 IPR013087 -
Gso12g1501 410 SMART c2h2final6 294 327 IPR013087 -
Gso12g1501 410 SMART c2h2final6 241 263 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1501 Gso-Chr12 38330328 38332792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1501 26 387 C2H2 Transcription Factor Family AT5G22890 46.684 9.50e-106 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g1501 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1501 - - gmx:100802769 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1501 12 38330328 38332792 Gso11g3342 11 49208510 49210733 GST
Gso12g1501 12 38330328 38332792 Gso12g0665 12 6495143 6496474 PCT
Gso12g1501 12 38330328 38332792 Gso11g1450 11 16832581 16834578 PCT
Gso12g0665 12 6495143 6496474 Gso12g1501 12 38330328 38332792 PCT
Gso11g1450 11 16832581 16834578 Gso12g1501 12 38330328 38332792 PCT