Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1500 ATGTTGGCACAAATGGACATGGAGGAGCTTGTCTCATGTAACAACAACGATGCCACCAACATAGCCAAAGGGAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCTCCTTGTGCTGTTGTCGCTGCTACCACTATCACCACCACCACCACTGCTATCACCGCTATCACCACCGTCATGACATCTAGCTGTTCAAGTGCTTCTGCCGGTGGCGGTGGATCGTCTTCATCCACCACCTTTGAGGAGGAAGAGGAAGACATGGCTAATTGTTTGATTCTCCTAGCACAAGGAAGAGTAGGACGGGACCCTCCTCATCATCACAAGGACCTATGTGGTGATGTCAAGACAGAGAAGGGTAGCACCAAAGTTGATCATTTATATGTTTATGAGTGCAAAACATGCAGCCGAACATTCCCTTCTTTTCAAGCACTAGGTGGCCACAGGGCAAGTCACAAGAAGCCCAAGATGGAGGAGAAAAAGTTGTTATCACCACCACTGTTATTGCCACCACTGCCAGCTTCGTCTTCGTCACTATTTAATTTTGAGGAAGCAAAACAAAGTCACATGAAGAATATTATTAGCCCTTCTGTCTCCCTTCAATTAGGGTGTGGCATTAACAAGGTTGGTTTAAATTTCCATGGCAACAAGTCCAAGATTCATGAGTGTTCCATCTGTGGGTCAGAATTCACATCAGGGCAAGCATTGGGTGGTCACATGAGGAGGCATAGAGCATCTAACAATAATAACAATATTGTTCAGACAACAACAACAACAACAACTACTTCTAATGGTGCTGTTGATGTTAAGCCTCGGAATGTTCTAGAGTTGGATCTTAACCTTCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGCGAATCCGAATTCTATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 942 0.4682 MLAQMDMEELVSCNNNDATNIAKGKRTKRRLRPLSPCAVVAATTITTTTTAITAITTVMTSSCSSASAGGGGSSSSTTFEEEEEDMANCLILLAQGRVGRDPPHHHKDLCGDVKTEKGSTKVDHLYVYECKTCSRTFPSFQALGGHRASHKKPKMEEKKLLSPPLLLPPLPASSSSLFNFEEAKQSHMKNIISPSVSLQLGCGINKVGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRASNNNNNIVQTTTTTTTTSNGAVDVKPRNVLELDLNLPAPEDDLRDSKFQFPANPNSMMLSAAPALVGCHY* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1500 313 Gene3D Classic Zinc Finger 126 241 - -
Gso12g1500 313 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 313 - -
Gso12g1500 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 246 IPR013087 -
Gso12g1500 313 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Gso12g1500 313 SMART c2h2final6 219 241 IPR013087 -
Gso12g1500 313 SMART c2h2final6 128 150 IPR013087 -
Gso12g1500 313 PANTHER ZINC FINGER PROTEIN ZAT5 1 313 - -
Gso12g1500 313 ProSitePatterns Zinc finger C2H2 type domain signature. 221 241 IPR013087 -
Gso12g1500 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Gso12g1500 313 SUPERFAMILY beta-beta-alpha zinc fingers 127 241 IPR036236 -
Gso12g1500 313 Pfam C2H2-type zinc finger 127 153 - -
Gso12g1500 313 Pfam C2H2-type zinc finger 219 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1500 Gso-Chr12 38316887 38318171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1500 16 313 C2H2 Transcription Factor Family AT2G28200 42.997 8.91e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso12g1500 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1500 - - gmx:100788646 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1500 12 38316887 38318171 Gso11g3343 11 49217803 49219166 GST
Gso12g1500 12 38316887 38318171 Gso12g0663 12 6479416 6480728 PCT
Gso12g1500 12 38316887 38318171 Gso11g1453 11 16852925 16854306 PCT
Gso12g0663 12 6479416 6480728 Gso12g1500 12 38316887 38318171 PCT
Gso11g1453 11 16852925 16854306 Gso12g1500 12 38316887 38318171 PCT