Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g1497 ATGAACACGATGGATGTTCACCAAGACACACTGACGTACATGAATGATTTTGAGCTGTACGACTTCGTTGCTGATCCAAATTTTGATCAGTTCATCAATTTGTTCCGAGGAGAGAATGAAGATGCTAACTGTGATCACTTCGGTTCTGACCTTATCAATGATTGTTTTGCTAACAATCAGCAGCAGCTACTTTCATGTCCAGCAAACCCTTTTGATCAGAACAATAATAATAATGCTGTGAATGTCTATGATCCAAGCTCCACATTTAGCTCCTTCTCTTACTATGATAGGGAGCTCAAGGGGGAAGGAGGAGAAGAACTTGATGAAGAACATTCTTCTGGGACGATGACAACGACAACTAACAATGCTGTTGGCAAACCAAAAGTAAAAACTGATATGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTTTATGCATTGCGTTCTTTGGTTCCCAACATAACTAAGATGGATAAGGCTTCTATAATTGGAGACGCAGCATCATATGTGCATGACCTTCAAGCTCGAGCTAGGAAGCTGAAGGCTGAGGTTGCAGGACTTGAAGCATCTTTATTAGTGTCTGAAAATTATCAAGGATCAATTAACTACCCCAAAAATGTGCAAGTGGCCCGTAATATTAGTCATCCAATCTGCAAGAAGATCATGCAGATGGAAATGTTTCAAGTGGAGGAAAGAGGGTACTATGCAAAAATAATGTGCAATAAAGTACAAGGGTTGGCTGCTTCACTGTACAGGGCTCTTGAGTCTCTTGCAGGTTTTAATGTTCAGAACTCAAACTTGGCTACAGTTGATGACAGTTTTCTACTTACATTTACATTGAATGTAAAAGGAACTGAACCAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGCTGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTCCTGCTTGA 969 0.4076 MNTMDVHQDTLTYMNDFELYDFVADPNFDQFINLFRGENEDANCDHFGSDLINDCFANNQQQLLSCPANPFDQNNNNNAVNVYDPSSTFSSFSYYDRELKGEGGEELDEEHSSGTMTTTTNNAVGKPKVKTDMSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAASYVHDLQARARKLKAEVAGLEASLLVSENYQGSINYPKNVQVARNISHPICKKIMQMEMFQVEERGYYAKIMCNKVQGLAASLYRALESLAGFNVQNSNLATVDDSFLLTFTLNVKGTEPEINLPNLKLWVTAALLNQGFEFVASFPA* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g1497 322 MobiDBLite consensus disorder prediction 100 127 - -
Gso12g1497 322 MobiDBLite consensus disorder prediction 113 127 - -
Gso12g1497 322 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 318 - -
Gso12g1497 322 Pfam Helix-loop-helix DNA-binding domain 139 181 IPR011598 GO:0046983
Gso12g1497 322 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 200 IPR036638 GO:0046983
Gso12g1497 322 Gene3D - 127 197 IPR036638 GO:0046983
Gso12g1497 322 Coils Coil 177 197 - -
Gso12g1497 322 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Gso12g1497 322 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 318 - -
Gso12g1497 322 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g1497 Gso-Chr12 38286926 38288757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g1497 4 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 49.216 3.14e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso12g1497 HLH 3.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g1497 - - gmx:100787584 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g1497 12 38286926 38288757 Gso11g3345 11 49241973 49243752 GST
Gso12g1497 12 38286926 38288757 Gso11g1455 11 16877100 16878738 PCT
Gso11g1455 11 16877100 16878738 Gso12g1497 12 38286926 38288757 PCT